Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07980 109 / 4e-28 dentin sialophosphoprotein-related (.1) AT5G07940 104 / 4e-26 unknown protein AT5G07970 96 / 2e-23 dentin sialophosphoprotein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021162 [exp] 238 / 6e-73 AT5G07940 270 / 4e-73 unknown protein Lus10021621 [exp] 174 / 2e-50 AT5G07940 265 / 4e-72 unknown protein Lus10034692 [exp] 71 / 9e-16 AT5G07980 66 / 2e-13 dentin sialophosphoprotein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061400 [exp] 159 / 2e-45 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1) Potri.015G056400 [exp] 134 / 1e-36 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040531 pacid=23157753 polypeptide=Lus10040531 locus=Lus10040531.g ID=Lus10040531.BGIv1.0 annot-version=v1.0 ATGCCTGGCAACGAAGTTGGAGATAGGATCCATAACTTCTTTGGGCAGGAGAGTCCTTCTCAGGCTCAGCACCATTCTCAAATTGCTGATGCATCCTGGC CTGGGGTAAGTGGTAACCCTTGGGCTGGAAGTCAGGGACATATATCCACACCCTTCGTATCTGATTTAAAGAGCCGTAATTTACAGCAATCAGTTGCTAA TTATGATAGAGGATATGGTGGTCAGCCACCACCTGTGCAGCATGATATGAGCTTTCAGCAATCAATTGAAAGAACAGAGCATACTAGAAGTCAATCTCAA AATCAACAGCCAAATACAAATGGATTCTTCCAAGGTCATCAGGGTTTCCAGACAAGGCAGAATGAAACAAACTTTTTGGGAGTGGATGCAGAACCTGATC GCCGTAATCTAACAGCAAAGGGGTTTTCCGCAGTTGGTGCACCTCCGGGCACACAAAGGGTTTTTCTGCATTTGATGCGCATCAGGGAAACGGCCCTGAA ATTCACAAAAGAAATCCAGTAA
AA sequence Show only first row Show all	>Lus10040531 pacid=23157753 polypeptide=Lus10040531 locus=Lus10040531.g ID=Lus10040531.BGIv1.0 annot-version=v1.0 MPGNEVGDRIHNFFGQESPSQAQHHSQIADASWPGVSGNPWAGSQGHISTPFVSDLKSRNLQQSVANYDRGYGGQPPPVQHDMSFQQSIERTEHTRSQSQ NQQPNTNGFFQGHQGFQTRQNETNFLGVDAEPDRRNLTAKGFSAVGAPPGTQRVFLHLMRIRETALKFTKEIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040531 [exp]	0	1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	2.0	0.9723
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024135 [exp]	2.2	0.9637
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	2.4	0.9714
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	3.0	0.9665
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Lus10009601 [exp]	3.5	0.9653
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	6.5	0.9601
AT1G17450			B-block binding subunit of TFI...		Lus10000374 [exp]	6.7	0.9555
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017747 [exp]	8.8	0.9556
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Lus10016597 [exp]	10.0	0.9504
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	10.2	0.9441

Compare expression of checked genes

Lus10040531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.