Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07980 291 / 3e-80 dentin sialophosphoprotein-related (.1) AT5G07970 236 / 1e-63 dentin sialophosphoprotein-related (.1) AT5G07940 179 / 5e-45 unknown protein AT3G29385 119 / 4e-30 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021162 [exp] 1514 / 0 AT5G07940 270 / 4e-73 unknown protein Lus10021621 [exp] 410 / 2e-122 AT5G07940 265 / 4e-72 unknown protein Lus10034693 [exp] 332 / 1e-96 AT5G07940 126 / 3e-29 unknown protein Lus10034692 [exp] 50 / 9e-07 AT5G07980 66 / 2e-13 dentin sialophosphoprotein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056400 [exp] 588 / 0 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1) Potri.015G056200 [exp] 572 / 0 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1) Potri.012G066600 [exp] 570 / 1e-179 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1) Potri.012G061400 [exp] 565 / 3e-175 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040532 pacid=23157627 polypeptide=Lus10040532 locus=Lus10040532.g ID=Lus10040532.BGIv1.0 annot-version=v1.0 ATGGACTCTACTGAATCTCCTGTTAATTTCAATTTTTTTGGGGCTCAGCACCAAATGAACTCCCAACATTCAGGAATTATGCAATCTCTCTCTAGGCAAC CTCTGGGGATTGGCGATATGCATCTTTTGCAGCAGCAGTTGATACTCAAACAGATGCAAGAATATCAGAGACAAAGACAACATCAAGTGCAACAACAGCA GCAAGAATCAAGACAAATTAATATTATGAATCAAGCTTCCCAATCTTTGTTTAATGGCATACCTGTACAGGATGCACCCGGTTATGAAATGCAGCCCGAG GCTATACCAGCTAACTCAAACTGGCAACAGAATAACATGTCTTCAGACATGCGAGGGACATCTAGTGGGCTTGGTTTTTTACCGGAACAAAACCAAGCAG TTCACTTGATGGGCATCGTTCCTCAACAAGTTGATCAATCTCTTTTTGGTGTCCCCATTTCTGGAGCAAGAGTCCCTTCAAGTCATTTTTCACCCATTCA AATGGATAAGGCTCCCATCCAGCATATGTCTAGCAATAGTAACTCTCTTCTAGCTAATCATTTTAGGGGGTCGTCAAACCTAGTGAATGTTCAAGATGTA ACTTTGGGTTCTGGACAAGGCTATCAGGCAAGAAACATGACTGAGAGAGTAGACAGTCAAGGATTTGATAGTGGAATTAATTTAGAACAACTGCAGCGAG CAAATTCTCAGGAAAGCAGTGGGCCAGCCCAGGAATTTCAGCGGAGGCAAGATGGAGCTGGTCCATCAGAATCATCACAGGAAAAGACGGTTGTTCAAGC AGCATCTTCTCAGAATGTTGCTACACTAGATCCAACAGAAGAGAGGATTTTGTATGGATCGGATGTTAATTTGTGGGATGCATTTGGCAGCAGTGATCAT GTCAATTCTGGAACTTTTAATACGATTGAGGCTACAGACACGTCGGGTGGTGCTTTTTCATCTTTACAAAGTGGAACATGGAGTGCTCTTATGCAGTCTG CTGTGGCGGAAACTTCTAGTGCAGATGTAGGCACCGCAGAGGAATGGAGTGGCCAGGCTACTGAACGTCAATCCGGAGAGCGGCAGACCTCGGCTGTAAA TGATATCATGAAACTACAAACAGCTTGGGCAGGTAACAGCTTCCAGACTTCCTCAACCTTAACTAATCCCTTCCGCCGCTCAGGTGATGATAATGCAAGT ATGAATACGAATGAGATACAAAGAGTTCATCAATCTGAAGTTGGTTCTTCACAAGACGAGAGTGAGAGGTCGCCGGTGAATTGTTTTCAGAAAGTTCCGC AGCAGTTTGGAAAAGCGTTGTCCAAGGTTGATCAGTGTGCTAACTTGTTCTTCCATGAACCTCTACCTTCAACGGTTTTCTTACTCCCTTTACTGTTTGT CTTTGGTTCATTTGACAGTAACAACATGCTTGAACTGCTTCACAAGGTTAATCACTCGAGTGAAACTGGAAACTCCACGTATCCCAGTTCTTCAAGTCAG GATCCTTCTCCTGATATTCCTGAAACTGAAGCTTATGGAAGAACGTTGCAGCTCCAGCAAAATAGATCTTCTTTTTCTCAAGGGGAGAAGAATACTACCG GGATGGTTCCCTTGTCCTTTGTTCAGTCTTTCCCACGCTCAGTTGAAACTTTGGATGGGGATGTGAGGAATAAGACTCATAATATTTTGAGACAAATCAA TAGTAATAACCATGGGAGAATTTCTGCTGCCTTGTCTCCTGGTTCGCCCTATTCTAGAAATCTTGCTCAAGACTTGCAGATGCGTGAGACCGGCAGGGAA GCAAATGCCAATCAATCTCTAAATGATTCATTTGATAAGTTTGTCTCCCAGGTGCAGCATACAACTCAGGCTGTTGATAGAGCTCAATCAAGCCAATCAG GACAGACCTCCGTGCTTGACACTTCCTGGGCCACAACATGCAATGATGTTGCTTCCTCTGCTGAGGTTTCCCGACTTGATAACGGTCAAAATGATAAGGA ATGTGGTCAACAATTTCCAGTACTGGAAGCGAGATCTACTTCCCAATCCTTCGCAGTATCTGGTTTACATCAGGATGGAGCAAAAAATTTAACTCCAAGG ACCAGTATTTTGAATAATCACCCTTCATTCAGCACTCCACCTTTCAGAGGCTTGCCAAATGCGTTCGAGTCTAATGTCCAACCAGACAGCACTACTGAAA CGACTTGGCCACAGAAGCTGGAATACCAAAATCCACAGAGAAGATTTAACAGTTTGTCTGCATCTGGTGCAACTTTTACAAACCCAGAACACCATGAAAA AGATAATGGCCAGCAGACACCACTGGTTAATGATTTTTCACAGAAGATGATGAGCCCCTTGCAAGGGAAAGATTCTATTATAAATCGTGTTAGCAGCATG TATGCTTCAAGTACTGTAAGCAATCAAATGGATATTGCAGCTTTTGGACGCTCTTTAAGACCCAATGCTCCTTTGAATCAAAACTACTCGTTGCTGCATG AGGTTCAGGATGTAAACAACAGGGATGTAGATCCAATTGGTAGGAGTTTGAAGCGGCTGAAAGGTTCTGATCTCGAGCCACAGCTAGCAGCTTCTGATGA TGGGCAACAGCTATATGGACACACTCACATGCCCAGAGGTGCATCATTGAATAATGCTCCTAGTTCCCTTGATGATAAACGAGTTAGCTCTTCTGGGAGA CAAACAGATGAGCAGCATCTACCTTCTAAAGACATGCACGGGTTTAATGGAAACAATTATAGAAATTTTGCTGACAGCAACAGTGTGGCTTCTGGTAGAG GTGAACATGCCCAGATCAGTCCCCAGATGGCTCCTTCATGGTTTAATCAGTATGGCACCTTCAAACATGGGCAGAATTTGTCCAAATATGATTCTGGGAA AGCTGCTGCTTTGAAGCATGCAGAATTCGCTCTTAGTTCTAGCAGGTCCTCTAACGGACTGCCTACTCCAAGCTCATTAGAGGTTGCAACCATTTGCGGT GATGCATATCAGTATGGTGTTGTCAAGAGAAGTTCAACTCTGATAGCAAGTGAGGAGTTTTCTTTTCCTCAATTGTCACGCCCCGACACGGTTGATATGA GTTTGTTTGTTGTAAGACCAAAGAAGCGCAAGAGTGCCACATGTGATCTTGTTCCGTGGCATAAAGAGGTGATTAAGATTCCGCAGAGGCTCCAGAATAT AAGTATGGCAGAAGTGAAATGGGCTAACGCTGTTAATCGTTTAAGTCAGAAGATGGAAGATGGTGGTGAAATTATAAATGATGGTACGCCAGCTCTCAAA TCGAAGAGAAGACTAATAGTGACGACACAGCTTATGCAGTTACTGCTTCATCCGCCACCGGCATGGGTTATGTCTGCAGATGCAATTTCACAGTATGAGA GTGCTGCTCATTTTATCGCTCGGTCAACTATGGGGGATGTATGTGGTTCACTTTCTGGTTTTGCAAGCGACAGTTCTCCACCTCCCGACAGTGGGAACAT AAGTCCTGAGAGGCCCCGCATGTCTAAAAGTGTGAGTGATGAGTACTTCTCAAAAGTTATGGAAGCTCTCATCAGTAAAACAAAGAAAGTGGAAAGTGAC TTGCTGAGATTGGACAGGAGCATGTCAATATTAGACTTGAGAGTAGAATGTGAAGATTTGGAGAAGTTCTCAGTCATAAATCGGTTTGCCAAGTTCCATG GACCGGGGCAAACCGGGGGAGGAGCAGCAGACAGTTCGTTGACTTCTTCGAATGCACAAAAGTTGTTTCTGCAGAGATATGTTACTGCAGTTCCATTTCC TAGGAATATCCCTGACAGGGTACAATGTCTGTCACTCTGA
AA sequence Show only first row Show all	>Lus10040532 pacid=23157627 polypeptide=Lus10040532 locus=Lus10040532.g ID=Lus10040532.BGIv1.0 annot-version=v1.0 MDSTESPVNFNFFGAQHQMNSQHSGIMQSLSRQPLGIGDMHLLQQQLILKQMQEYQRQRQHQVQQQQQESRQINIMNQASQSLFNGIPVQDAPGYEMQPE AIPANSNWQQNNMSSDMRGTSSGLGFLPEQNQAVHLMGIVPQQVDQSLFGVPISGARVPSSHFSPIQMDKAPIQHMSSNSNSLLANHFRGSSNLVNVQDV TLGSGQGYQARNMTERVDSQGFDSGINLEQLQRANSQESSGPAQEFQRRQDGAGPSESSQEKTVVQAASSQNVATLDPTEERILYGSDVNLWDAFGSSDH VNSGTFNTIEATDTSGGAFSSLQSGTWSALMQSAVAETSSADVGTAEEWSGQATERQSGERQTSAVNDIMKLQTAWAGNSFQTSSTLTNPFRRSGDDNAS MNTNEIQRVHQSEVGSSQDESERSPVNCFQKVPQQFGKALSKVDQCANLFFHEPLPSTVFLLPLLFVFGSFDSNNMLELLHKVNHSSETGNSTYPSSSSQ DPSPDIPETEAYGRTLQLQQNRSSFSQGEKNTTGMVPLSFVQSFPRSVETLDGDVRNKTHNILRQINSNNHGRISAALSPGSPYSRNLAQDLQMRETGRE ANANQSLNDSFDKFVSQVQHTTQAVDRAQSSQSGQTSVLDTSWATTCNDVASSAEVSRLDNGQNDKECGQQFPVLEARSTSQSFAVSGLHQDGAKNLTPR TSILNNHPSFSTPPFRGLPNAFESNVQPDSTTETTWPQKLEYQNPQRRFNSLSASGATFTNPEHHEKDNGQQTPLVNDFSQKMMSPLQGKDSIINRVSSM YASSTVSNQMDIAAFGRSLRPNAPLNQNYSLLHEVQDVNNRDVDPIGRSLKRLKGSDLEPQLAASDDGQQLYGHTHMPRGASLNNAPSSLDDKRVSSSGR QTDEQHLPSKDMHGFNGNNYRNFADSNSVASGRGEHAQISPQMAPSWFNQYGTFKHGQNLSKYDSGKAAALKHAEFALSSSRSSNGLPTPSSLEVATICG DAYQYGVVKRSSTLIASEEFSFPQLSRPDTVDMSLFVVRPKKRKSATCDLVPWHKEVIKIPQRLQNISMAEVKWANAVNRLSQKMEDGGEIINDGTPALK SKRRLIVTTQLMQLLLHPPPAWVMSADAISQYESAAHFIARSTMGDVCGSLSGFASDSSPPPDSGNISPERPRMSKSVSDEYFSKVMEALISKTKKVESD LLRLDRSMSILDLRVECEDLEKFSVINRFAKFHGPGQTGGGAADSSLTSSNAQKLFLQRYVTAVPFPRNIPDRVQCLSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	0	1
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	2.4	0.8423
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10004142 [exp]	3.2	0.8618
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	3.7	0.8603
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	4.5	0.8179
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	4.5	0.8352
AT3G19780			unknown protein		Lus10040970 [exp]	6.0	0.8353
AT3G06670			binding (.1.2)		Lus10037742 [exp]	6.2	0.8569
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10022752 [exp]	7.1	0.8293
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	7.2	0.8117
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	7.5	0.8385

Compare expression of checked genes

Lus10040532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.