Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 256 / 1e-80 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 180 / 2e-51 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22400 179 / 3e-51 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 178 / 7e-51 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT3G21560 178 / 1e-50 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 174 / 1e-49 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G22370 171 / 4e-48 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 171 / 5e-48 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22380 171 / 6e-48 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 171 / 6e-48 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021163 [exp] 585 / 0 AT3G02100 192 / 7e-57 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 300 / 2e-97 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 300 / 2e-97 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 298 / 7e-97 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 296 / 5e-96 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10015746 [exp] 294 / 2e-95 AT3G02100 300 / 4e-97 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 294 / 3e-95 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 291 / 4e-94 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10034699 [exp] 279 / 3e-89 AT3G02100 285 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G084900 [exp] 429 / 2e-148 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 364 / 2e-122 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 331 / 1e-109 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 319 / 3e-105 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 300 / 9e-98 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 207 / 4e-62 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.005G073800 [exp] 196 / 1e-57 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.005G073766 [exp] 196 / 1e-57 AT1G22400 562 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Potri.007G095000 [exp] 194 / 9e-57 AT1G22340 543 / 0.0 UDP-glucosyl transferase 85A7 (.1) Potri.006G022600 [exp] 194 / 1e-56 AT1G22400 515 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10040533 pacid=23157819 polypeptide=Lus10040533 locus=Lus10040533.g ID=Lus10040533.BGIv1.0 annot-version=v1.0 ATGGATATCAGCAGTAGTTTCAAACCATCCAGAGAACCGCATTTCCTGCTGGTACCCTACCCAATACAAGGGCACACATCACCAATGATGAAGCTAGCTC ACCGGCTGGTCAACCATGGAAGCAAAGTCACCTTTTTTACTACAGAGTTTGCGCATTCACGAATGAGGAAGAGCGCAGTGGCTGCTGATTCACTTGGCTT CGATATAGTATCGTCCCCTGACGGATTGCCCTTTGATCATGAACGCAAAGATGAGGTTGAAGTAGGCCAGAGTATCTCCAGAAGTGCTGGAATCACGACT GCTGTTTTCTTTGTCTCGTCTCCAGGGAACTTGTCTATGGTCCTCCAAATACCCACCCTTATTCAATCTGGAATCATTAATCCTCAAAATGGGAGCCCCA TACAAGACAAGGAGGTTCAGCTGTCCCCAAATCTGCCGATACTCAAAAGTCCCGATTTCACATGGAATATCCCGGAAGGAAGCGACGAGTACATGAAAAC GATGGTGTTCCATGCCATCAACGCAATAAACCAGACTGTACCTGCCGCTGATTGGGTCATATGCAACTGGTTTTCGGAACTCGACCCTTCCGCAGACACC TTGCTCCCTCGAATCCTCCCTGTAGGCCCATTGCTTTCAGGTGGCCATCAAGCCATCGGCAACCTTTGGTCGGAGGACTCAACTTGCTTAGCTTGGCTCG ATACCCACCCTCCCGGTTCAGTCATTTACATTGCCTTTGGCAGCACTACCAAGTTCAACCAAGCTCAGGTCAAAGAACTAGCACTTGGCCTCGAGCTCGT AAATCGCCCCTTCCTCTGGGTTGTCCGATCAGATCTCATTGACAACAATGGCGACGACGACAGCATTAGCATGGACAGAATGTTTAGGGACAAACTAGGT AGCATCGGAAAGGTTGTCGGATGGGCGCCTCAGGAGAAGGTTCTAGCACACTCTTCGATCGCATGTTTCTTGACCCACAGCGGTTGGAACTCAGTTGTGG AAGGGATAAGCTTTGGGGTTCCAATGCTCTGCCTGCCTTACCGTGGAGACCATTATTACATCAGGACTTGCGTTTGTTATGGCTGGAAAGTTGGGCTGGA ACTGAATCCCGATGGGACTGGGATTGCGACCCATGATGAAATTAAGAGGAAAGTTGATCAATTGCTCTCTGATGGCGGCATTAAAGCTAATGCTATCAAG TGGAAAGAATTGGCTCAAGCCAACGTCAGGAAAGGTGGGCTTTCAGACAAAAGACTTCAAGAATTTGTCACTAAGATGATATTCTGA
AA sequence Show only first row Show all	>Lus10040533 pacid=23157819 polypeptide=Lus10040533 locus=Lus10040533.g ID=Lus10040533.BGIv1.0 annot-version=v1.0 MDISSSFKPSREPHFLLVPYPIQGHTSPMMKLAHRLVNHGSKVTFFTTEFAHSRMRKSAVAADSLGFDIVSSPDGLPFDHERKDEVEVGQSISRSAGITT AVFFVSSPGNLSMVLQIPTLIQSGIINPQNGSPIQDKEVQLSPNLPILKSPDFTWNIPEGSDEYMKTMVFHAINAINQTVPAADWVICNWFSELDPSADT LLPRILPVGPLLSGGHQAIGNLWSEDSTCLAWLDTHPPGSVIYIAFGSTTKFNQAQVKELALGLELVNRPFLWVVRSDLIDNNGDDDSISMDRMFRDKLG SIGKVVGWAPQEKVLAHSSIACFLTHSGWNSVVEGISFGVPMLCLPYRGDHYYIRTCVCYGWKVGLELNPDGTGIATHDEIKRKVDQLLSDGGIKANAIK WKELAQANVRKGGLSDKRLQEFVTKMIF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10040533 [exp]	0	1
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10001984 [exp]	1.7	0.7845
					Lus10025700 [exp]	9.1	0.7566
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	16.4	0.7558
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	18.0	0.7497
AT5G58820			Subtilisin-like serine endopep...		Lus10007042 [exp]	20.1	0.6948
AT5G35390			Leucine-rich repeat protein ki...		Lus10017144 [exp]	22.2	0.6707
AT5G18310			unknown protein		Lus10021984 [exp]	23.0	0.6716
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10042082 [exp]	24.0	0.7284
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10019300 [exp]	29.2	0.7096
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10043266 [exp]	30.5	0.6936

Compare expression of checked genes

Lus10040533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.