Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65430 439 / 2e-157 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) AT5G10450 437 / 9e-157 14-3-3lambda, AFT1, GF14LAMBDA, GRF6 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, G-box regulating factor 6 (.1.2.3.4) AT4G09000 375 / 3e-132 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G35160 375 / 8e-132 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT1G78300 374 / 1e-131 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT3G02520 374 / 1e-131 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT5G38480 372 / 6e-131 RCI1, GRF3 general regulatory factor 3 (.1.2) AT5G16050 358 / 3e-125 GF14UPSILON, GRF5 general regulatory factor 5 (.1) AT1G26480 323 / 2e-111 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT2G42590 317 / 2e-109 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014899 [exp] 497 / 7e-180 AT5G65430 438 / 2e-157 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10025727 [exp] 439 / 2e-157 AT5G65430 454 / 3e-164 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10035934 [exp] 435 / 5e-156 AT5G65430 450 / 1e-162 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Lus10036481 [exp] 379 / 2e-133 AT1G78300 481 / 1e-174 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10017584 [exp] 375 / 4e-132 AT3G02520 471 / 1e-170 general regulatory factor 7 (.1) Lus10020940 [exp] 375 / 7e-132 AT1G78300 483 / 2e-175 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10033545 [exp] 375 / 8e-132 AT3G02520 470 / 4e-170 general regulatory factor 7 (.1) Lus10008715 [exp] 375 / 1e-131 AT1G78300 459 / 2e-165 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Lus10010349 [exp] 358 / 3e-125 AT1G78300 454 / 5e-164 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157700 [exp] 462 / 1e-166 AT5G65430 427 / 1e-153 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.002G103800 [exp] 458 / 3e-165 AT5G65430 429 / 4e-154 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3) Potri.004G101700 [exp] 377 / 7e-133 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.005G162400 [exp] 377 / 8e-133 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.002G099800 [exp] 376 / 1e-132 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.017G113300 [exp] 371 / 2e-130 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1) Potri.011G110900 [exp] 325 / 2e-112 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.002G097500 [exp] 322 / 2e-111 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.005G164500 [exp] 322 / 3e-111 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.010G159300 [exp] 321 / 7e-111 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10040534 pacid=23157893 polypeptide=Lus10040534 locus=Lus10040534.g ID=Lus10040534.BGIv1.0 annot-version=v1.0 ATGGCTGCACTACCCGACAACTTCACCAGAGACCAGTACGTCTACCTCGCCAAGCTCGCCGAGCAAGCCGAGCGCTATGAGGAAATGGTCCAGTTCATGC AAAAGCTTGTTCTCGCCTCCACTCCCGCCGCAGAACTCACCGTTGAGGAGCGTAACCTCCTTTCCGTCGCCTACAAGAACGTTATCGGCTCCCTCCGCGC CGCCTGGAGGATCGTCTCCTCGATCGAGCAAAAAGAGGAAGGGAGGAAGAACGAGGAGCACGTGGTGCTCGTCAAGGATTACAGATCTAAAGTGGAGAAC GAGCTCTCTGAGATCTGCGCTAGTATTCTCCGTCTACTCGACTCGAATCTGGTTCCGTCTGCCACCTCTAGTGAGTCCAAGGTGTTTTACTTGAAGATGA AGGGAGACTACCACAGGTATTTGGCCGAATTCAAGGTTGGCGATGAGAGGAAGACCGCTGCTGAGGATACTATGCTGGCTTATAAGGTTGCTCAGGAAAC TGCTGCTGCGGATCTTGCCCCGACGCATCCTATTAGGTTGGGTCTGGCTCTCAATTTCTCGGTGTTTTACTTCGAGATCCTCAACCAGTCTGACAAAGCT TGCAGTATGGCTAAACAGGCCTTTGAGGAAGCGATCGCTGAGATAGATACATTGGGTGAAGAATCATACAAAGATAGTACCCTGATCATGCAACTCCTAC GGGACAACCTCACTCTTTGGACATCAGATGTCCAGTGCACCATAACAAAGTGTAGCGTGGATAGTGGGAGTGCACCTTTCCAAGTTTTATTATGCATTGT GCATGGTGGAAGTTCACCTTACCAAGACCCACAATGCATAATGGACGCGCACTATACAAAGATGCACGATGCATAA
AA sequence Show only first row Show all	>Lus10040534 pacid=23157893 polypeptide=Lus10040534 locus=Lus10040534.g ID=Lus10040534.BGIv1.0 annot-version=v1.0 MAALPDNFTRDQYVYLAKLAEQAERYEEMVQFMQKLVLASTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVVLVKDYRSKVEN ELSEICASILRLLDSNLVPSATSSESKVFYLKMKGDYHRYLAEFKVGDERKTAAEDTMLAYKVAQETAAADLAPTHPIRLGLALNFSVFYFEILNQSDKA CSMAKQAFEEAIAEIDTLGEESYKDSTLIMQLLRDNLTLWTSDVQCTITKCSVDSGSAPFQVLLCIVHGGSSPYQDPQCIMDAHYTKMHDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10040534 [exp]	0	1
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10014899 [exp]	1.0	0.8821
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	4.7	0.8283
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10017116 [exp]	6.0	0.8251
AT5G17210			Protein of unknown function (D...		Lus10010077 [exp]	10.7	0.8151
AT1G12310			Calcium-binding EF-hand family...		Lus10004332 [exp]	11.1	0.8183
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	12.2	0.7933
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	12.4	0.7758
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10028257 [exp]	16.7	0.7024
AT1G53750		RPT1A	regulatory particle triple-A 1...		Lus10031243 [exp]	16.8	0.7078
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10034573 [exp]	17.3	0.7639

Compare expression of checked genes

Lus10040534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.