Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33735 85 / 8e-22 Chaperone DnaJ-domain superfamily protein (.1) AT5G16650 80 / 6e-20 Chaperone DnaJ-domain superfamily protein (.1) AT5G01390 62 / 5e-12 DNAJ heat shock family protein (.1.2.3.4) AT2G20560 62 / 7e-12 DNAJ heat shock family protein (.1) AT3G08910 61 / 1e-11 DNAJ heat shock family protein (.1) AT4G28480 61 / 1e-11 DNAJ heat shock family protein (.1.2) AT5G25530 58 / 1e-10 DNAJ heat shock family protein (.1) AT1G10350 57 / 5e-10 DNAJ heat shock family protein (.1) AT3G62600 54 / 6e-09 ATERDJ3B DNAJ heat shock family protein (.1) AT3G47940 53 / 7e-09 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014901 [exp] 181 / 1e-59 AT2G33735 85 / 2e-22 Chaperone DnaJ-domain superfamily protein (.1) Lus10000010 [exp] 119 / 6e-36 AT5G16650 47 / 5e-08 Chaperone DnaJ-domain superfamily protein (.1) Lus10017687 [exp] 62 / 6e-12 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 61 / 2e-11 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 61 / 2e-11 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 60 / 5e-11 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 60 / 5e-11 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10013981 [exp] 59 / 6e-11 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10008109 [exp] 58 / 3e-10 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G103900 [exp] 114 / 3e-33 AT2G33735 147 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) Potri.019G041400 [exp] 81 / 3e-20 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G078200 [exp] 76 / 2e-18 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G136700 [exp] 61 / 1e-11 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 61 / 2e-11 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 61 / 2e-11 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 60 / 4e-11 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 60 / 4e-11 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 57 / 3e-10 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.016G088600 [exp] 56 / 1e-09 AT5G03160 570 / 0.0 homolog of mamallian P58IPK (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10040535 pacid=23157564 polypeptide=Lus10040535 locus=Lus10040535.g ID=Lus10040535.BGIv1.0 annot-version=v1.0 ATGACTTTCGATGATTTCGACGATCCTCAATCTTCTTCTCATCAGCCCAACCACCAGGACGCTTACCTCAATTTCGATTTCTTCTCTCTCGTTTCCAACC CCAAGGATTACTACAAGCTTCTGGAAGTCGACTACGATGCTTCTGATGATGCTATTCGCTCCAATTACATCCGCCTCGCTCTGAAATGGCATCCCGATAA GCACAAGGACCAGGAGGACAATGCCACTTCTCGATTTCAAGACATTAATGAGGCTTACCAAGGTCCTTGCTTTCTTTATGTTGATGGAAGTCAAGAAGCG TTAGGAGAGGTTATGCCTTTGCATATTGCATTGGATGATCTCCCATCGCAAGAACAGGAGACTGGGAACCAAGGGAGGAGAGAACATAAACTTTGTATCT TTTTTTCCATGACTAAGAAAGAACACAAGTTATCTGAATCTAGGTGCAATGTTCTTGTTCCTTAG
AA sequence Show only first row Show all	>Lus10040535 pacid=23157564 polypeptide=Lus10040535 locus=Lus10040535.g ID=Lus10040535.BGIv1.0 annot-version=v1.0 MTFDDFDDPQSSSHQPNHQDAYLNFDFFSLVSNPKDYYKLLEVDYDASDDAIRSNYIRLALKWHPDKHKDQEDNATSRFQDINEAYQGPCFLYVDGSQEA LGEVMPLHIALDDLPSQEQETGNQGRREHKLCIFFSMTKKEHKLSESRCNVLVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10040535 [exp]	0	1
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	4.4	0.8154
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	4.9	0.7735
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	6.8	0.7911
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	9.8	0.7649
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	12.2	0.7611
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10033990 [exp]	12.5	0.7701
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10027113 [exp]	13.3	0.7563
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	14.8	0.7714
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	18.7	0.7860
AT4G01995			unknown protein		Lus10016264 [exp]	19.2	0.7637

Compare expression of checked genes

Lus10040535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.