Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28200 338 / 6e-118 FIP1 FH interacting protein 1 (.1) AT2G22475 302 / 6e-103 GEM GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) AT4G40100 215 / 1e-69 GRAM domain family protein (.1) AT5G13200 189 / 5e-59 GRAM domain family protein (.1) AT4G01600 163 / 3e-49 GRAM domain family protein (.1.2) AT5G08350 125 / 5e-35 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23350 127 / 6e-35 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23370 124 / 2e-34 GRAM domain-containing protein / ABA-responsive protein-related (.1) AT5G23360 123 / 5e-34 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000640 [exp] 527 / 0 AT1G28200 333 / 5e-116 FH interacting protein 1 (.1) Lus10025728 [exp] 283 / 7e-95 AT2G22475 304 / 4e-103 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10035933 [exp] 249 / 8e-81 AT2G22475 265 / 1e-86 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10010279 [exp] 195 / 1e-61 AT2G22475 196 / 3e-62 GL2-EXPRESSION MODULATOR, GRAM domain family protein (.1.2) Lus10031986 [exp] 194 / 1e-60 AT5G13200 302 / 3e-103 GRAM domain family protein (.1) Lus10035154 [exp] 192 / 4e-60 AT5G13200 308 / 9e-106 GRAM domain family protein (.1) Lus10017372 [exp] 149 / 9e-44 AT5G08350 238 / 2e-79 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10010166 [exp] 146 / 8e-43 AT5G08350 233 / 1e-77 GRAM domain-containing protein / ABA-responsive protein-related (.1) Lus10013445 [exp] 141 / 1e-40 AT5G08350 246 / 1e-82 GRAM domain-containing protein / ABA-responsive protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G102800 [exp] 389 / 2e-137 AT1G28200 325 / 3e-112 FH interacting protein 1 (.1) Potri.005G159100 [exp] 387 / 1e-136 AT1G28200 295 / 2e-100 FH interacting protein 1 (.1) Potri.002G184100 [exp] 220 / 6e-72 AT1G28200 219 / 7e-72 FH interacting protein 1 (.1) Potri.014G109700 [exp] 212 / 1e-68 AT1G28200 221 / 1e-72 FH interacting protein 1 (.1) Potri.003G165400 [exp] 198 / 3e-62 AT5G13200 350 / 6e-122 GRAM domain family protein (.1) Potri.003G165700 [exp] 195 / 4e-61 AT5G13200 326 / 1e-112 GRAM domain family protein (.1) Potri.003G165500 [exp] 190 / 6e-59 AT5G13200 328 / 3e-113 GRAM domain family protein (.1) Potri.003G165600 [exp] 189 / 1e-58 AT5G13200 323 / 1e-111 GRAM domain family protein (.1) Potri.001G323300 [exp] 181 / 8e-56 AT5G13200 290 / 2e-98 GRAM domain family protein (.1) Potri.007G075700 [exp] 152 / 6e-45 AT5G08350 240 / 3e-80 GRAM domain-containing protein / ABA-responsive protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF02893 [flax] [poplar] GRAM GRAM domain
Representative CDS sequence Show only first row Show all	>Lus10040539 pacid=23157624 polypeptide=Lus10040539 locus=Lus10040539.g ID=Lus10040539.BGIv1.0 annot-version=v1.0 ATGGCTGAGAATCAGCATCCTCTTCCACCGCAGCTGCAGCAGCACCTTGATCAACCCGCCATTAAAACACCGACTGCGGAATCCATTACCTCCGACTACG CGCCCTACCCTAAGCTCGATCCTAAAGACGTAGCACCCCCTTCTGAGAATTGGGCTGACGTCTCCATGGCCGGCTCCGTTCCTCCTCCATCTCAGTCTCA CGCCGCTGCTCCCGGTCCTACTCCGATCCCTGGCGATCATGCTACTACTATGCCACCTGAATCCAATCCCTATGTGTCCCCTGCGCCCGCCTCTAAGAAC AAGATGGATGCAGTGAAAGATGTGCTAGGTAAATGGGGGAAGAAGGCTGCTGAGGCTACCAAGATGGCCGAGGATCTTGCTGGCAACATGTGGCAACACT TGAAGACGGGGCCTAGCTTTGCTGATGCTGCTGTTGGAAGGATTGCCCAATCCACCAAGGTGCTTGCAGAAGGTGGTTATGAGAAGGTTTTCAAACAGAC GTTTGAGAGTATTCCTGATGAACAACTTACTAAGACCTATGCGTGCTACCTCTCAACCTCTGCTGGCCCTGTCATGGGGACTTTATACTTGTCTACTGCA AAGCTTGCATTTTGTAGTGATAATCCTCTCTCATACAATGTTGCTGATCAAACTCAATGGAGCTATTACAAGGTTGTTATTCCCTTGCATCAACTGAAGG CTGTGAATCCATCAACAAGCAAGGTGAACACGTCTGAAAAGTATATCCAGATAATCTCTATCGACAATCATGAATTCTGGTTCATGGGTTTTGTCAACTA TGAGAGTGCAGTGAAAAATCTTCAAGGAGCCGTCCCTCATCCTATCTAG
AA sequence Show only first row Show all	>Lus10040539 pacid=23157624 polypeptide=Lus10040539 locus=Lus10040539.g ID=Lus10040539.BGIv1.0 annot-version=v1.0 MAENQHPLPPQLQQHLDQPAIKTPTAESITSDYAPYPKLDPKDVAPPSENWADVSMAGSVPPPSQSHAAAPGPTPIPGDHATTMPPESNPYVSPAPASKN KMDAVKDVLGKWGKKAAEATKMAEDLAGNMWQHLKTGPSFADAAVGRIAQSTKVLAEGGYEKVFKQTFESIPDEQLTKTYACYLSTSAGPVMGTLYLSTA KLAFCSDNPLSYNVADQTQWSYYKVVIPLHQLKAVNPSTSKVNTSEKYIQIISIDNHEFWFMGFVNYESAVKNLQGAVPHPI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10040539 [exp]	0	1
AT4G09830			Uncharacterised conserved prot...		Lus10028692 [exp]	3.0	0.8796
AT4G29340		PRF4	profilin 4 (.1)		Lus10034988 [exp]	3.2	0.8823
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	3.5	0.8721
AT3G18490			Eukaryotic aspartyl protease f...		Lus10042978 [exp]	4.0	0.8811
AT1G27190			Leucine-rich repeat protein ki...		Lus10013288 [exp]	8.9	0.8525
AT5G02420			unknown protein		Lus10037925 [exp]	10.2	0.8434
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	11.6	0.8693
AT5G18850			unknown protein		Lus10033997 [exp]	12.0	0.8615
AT4G10810			unknown protein		Lus10023038 [exp]	12.3	0.8569
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	14.7	0.8566

Compare expression of checked genes

Lus10040539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.