Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49470 816 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 816 / 0 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 812 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 748 / 0 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 734 / 0 protein kinase family protein (.1) AT4G23050 365 / 2e-115 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G11850 352 / 8e-109 Protein kinase superfamily protein (.1) AT1G08720 352 / 2e-108 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G73660 348 / 7e-106 protein tyrosine kinase family protein (.1) AT1G18160 346 / 1e-105 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037772 [exp] 946 / 0 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10016912 [exp] 805 / 0 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10017844 [exp] 365 / 6e-115 AT4G23050 520 / 4e-175 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10024502 [exp] 360 / 4e-113 AT4G23050 579 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10031341 [exp] 352 / 4e-109 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 355 / 5e-109 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10000937 [exp] 350 / 3e-108 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 350 / 7e-108 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10038955 [exp] 335 / 1e-101 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G105100 [exp] 934 / 0 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 927 / 0 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.003G122700 [exp] 375 / 2e-119 AT4G23050 606 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Potri.013G034800 [exp] 361 / 2e-111 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 358 / 2e-110 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 346 / 5e-106 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 343 / 6e-105 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 345 / 2e-104 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 338 / 3e-102 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.006G115800 [exp] 331 / 2e-101 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold
Representative CDS sequence Show only first row Show all	>Lus10040540 pacid=23157830 polypeptide=Lus10040540 locus=Lus10040540.g ID=Lus10040540.BGIv1.0 annot-version=v1.0 ATGGAGATGCCCCCGTCCGAAGATCTGCTCCAGAAGCTTCAGGATCTGCAAGATAGACAAGCTAACCTCCAGCAGGAGATGACCAATCTTAGGCTCTCCA CCGATACCAACCAGGAGAATATGCTCCACCAACAGCAACAGCAGCAGCATCACCACCATCACCATCACCACCACCATCCTCGCGCTCAGTCAATTTCTCC TCAGCGTATGCGGAGTTTTGAAGCCGATTCTGAGATTAAAAGATCCTCGCCCCCGTTCAGACCTTCTTCTACTCAGCAGAGAGAGTCTCATGGTCCGCAC AACGCAGATGGCGGCGACGGTAATGTTGCCGGTCCCTCGGCTAGCAAGTTTGCAGATAGTCAGTATTTGAATATCTTGCAGTCTATGAGGCAATCTGTAC ATCTCTTTGACCTTTCCGGTCTTATTACCTACTGGAATCGAACTGCTGAAAACCTTTATGGTTATACCGCGGCGGAAGCCATAGGTCAGGGCGTTGTTGA GCTGTTGGTTGATCCGAGGGATTATACGATGGCAGAGGATATTTTTCACCGAGTAACTCTGGGAGAGAGATGGACAGGACAGTTCCCTCTAAAGAATAAG AGCGGAGATAGGTTTACTATTGTGGCGAACATTTCTCCCTTCTACGATGAACAAAGTTCGTTGATAGGGATTGTATGTGTTTCTAGTGATTCACGACCCT TTCAAGAGGTTAGATTTGGTTTCTCTCGTCCAGGAAATTCAGAGGGCGATTCAACTTCAATTGGTGCTATAAGCAAGCCTGTTCTTGATTCACAACAACC TCTGCAGACATCATTCGCCTCTAGAATTTCGACTTTGGCAAACAGGATGAGCGATAAGGTGAAATCGAAAATGTGTAGCAGAGATAACAATGTTGATCAT GAAAGTGTTAGCGGAGATAGCCATCAATCTCATCATAGCTTCTTAGATGCCGCTATCTGTGACCAAAGGGACGATGCAAACTCTAGTGGAGCCAGTACTC CACGAGGAGATGTTCTTCCGTCTCCTTTTGTTGCTTTCCCTGACACTGATGATAACTTTTCTGCAAAACAATCGAGTCATTCTAGTGACGAGGGAAAACC TTCTATCCAGAAGATAATCGCATCAAAAGCAGAGGCGTGGATGGGCAAAAAAGGCTTGACATGGCCCTGGAAAGGGAATGAAAGAGAAGTTTATGAAGCG AAAAGCACCAAGTTTGTGTGGCCTTGGGTGCAGAATGATCAAGGGACCGAATCAAATAAACCCACAAGTTCCTTTTCTGGTACAAAATCTGAAAGCCACT CCGGTGAAGGTAATCGACGTACAAATAATGAAGCGTCTGGGTCCTGGTCATCCTCTGCGAATATTAACAGCACAAGCACTGTGAGTAGTCGTGGGAGCTC AAATACCAGTGCTGTTAATAGGTCAGACTTGGAAACAGACTGTTCAGACGAGATACTATGGGAGTATTTGACAATTGGAGAACAAATCGGTGAAGGGTCT TGTGGGACTGTCTATCATGCCCTGTGGTATGGATCAGATGTTGCCGTCAAGGTGTTCTCCAAGCAAGAGTATTCAGAGGACGTGATACTTTCATTTAGGC AAGAGGTATCACTTATGAAAAGACTTCGTCATCCAAATGTGTTGCTGTTTATGGGTGCCGTAGCCTCACCTCAGCGTCTCTGTATCGTTACAGAGTTCCT ACCACGTGGAAGTTTGTTCAGGTTACTCCAAAGGAAGACAACCAAACTGGATTGGAGACGGAAAGTGAGCATGGCCTTGGATATTGCTCGGGGTATGAAT TATCTTCATCATTACAACCCTCCTATAATTCATCGTGACTTAAAGTCTTCAAATCTTCTTGTTGATAAAAATTGGACAGTAAAGGTTGGTGATTTCGGGC TATCACGTTTAAAACATGAAACATTTCTCTCAACAAAGACTGGGAAAGGCACGCCTCAATGGATGGCACCGGAAGTTATCCGCAATGAACGCTCAGATGA GAAGTGTGACATATATAGCTTTGGAATAATATTGTGGGAACTTGCAACCGAGAAGATTCCATGGGAGAATCTCAACTCAATGCAGGTAATTGGTGCCGTG GGATTCATGGACCAACGATTGGAAATACCAAAAGGCGTGGACCCTCGCTGGGCCTCTATTATTGAAAGCTGCTGTTGCAGTGATCCAAGCAGCAGACCGA CGTTCCAAGAACTAATGGAAAAGCTCAAAGACCTTCATCGACAGAATAACATTCAGTTGCAAGCAGCACGTTCTTCTGCAGCCGGGGGAGGAGATACGTA A
AA sequence Show only first row Show all	>Lus10040540 pacid=23157830 polypeptide=Lus10040540 locus=Lus10040540.g ID=Lus10040540.BGIv1.0 annot-version=v1.0 MEMPPSEDLLQKLQDLQDRQANLQQEMTNLRLSTDTNQENMLHQQQQQQHHHHHHHHHHPRAQSISPQRMRSFEADSEIKRSSPPFRPSSTQQRESHGPH NADGGDGNVAGPSASKFADSQYLNILQSMRQSVHLFDLSGLITYWNRTAENLYGYTAAEAIGQGVVELLVDPRDYTMAEDIFHRVTLGERWTGQFPLKNK SGDRFTIVANISPFYDEQSSLIGIVCVSSDSRPFQEVRFGFSRPGNSEGDSTSIGAISKPVLDSQQPLQTSFASRISTLANRMSDKVKSKMCSRDNNVDH ESVSGDSHQSHHSFLDAAICDQRDDANSSGASTPRGDVLPSPFVAFPDTDDNFSAKQSSHSSDEGKPSIQKIIASKAEAWMGKKGLTWPWKGNEREVYEA KSTKFVWPWVQNDQGTESNKPTSSFSGTKSESHSGEGNRRTNNEASGSWSSSANINSTSTVSSRGSSNTSAVNRSDLETDCSDEILWEYLTIGEQIGEGS CGTVYHALWYGSDVAVKVFSKQEYSEDVILSFRQEVSLMKRLRHPNVLLFMGAVASPQRLCIVTEFLPRGSLFRLLQRKTTKLDWRRKVSMALDIARGMN YLHHYNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETFLSTKTGKGTPQWMAPEVIRNERSDEKCDIYSFGIILWELATEKIPWENLNSMQVIGAV GFMDQRLEIPKGVDPRWASIIESCCCSDPSSRPTFQELMEKLKDLHRQNNIQLQAARSSAAGGGDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	0	1
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10028877 [exp]	1.4	0.8405
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	6.5	0.8044
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10032279 [exp]	7.3	0.7783
AT2G15630			Pentatricopeptide repeat (PPR)...		Lus10022128 [exp]	9.7	0.7295
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10035243 [exp]	10.6	0.8245
AT3G06670			binding (.1.2)		Lus10037742 [exp]	12.2	0.8168
AT3G01320		SNL1	SIN3-like 1 (.1.2)		Lus10014504 [exp]	13.3	0.8231
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10034780 [exp]	13.9	0.8184
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	15.9	0.7734
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035867 [exp]	16.0	0.7129

Compare expression of checked genes

Lus10040540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.