Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17060 471 / 5e-168 Pectin lyase-like superfamily protein (.1) AT2G36710 249 / 7e-80 Pectin lyase-like superfamily protein (.1) AT5G19730 246 / 6e-79 Pectin lyase-like superfamily protein (.1) AT2G21610 244 / 1e-78 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT2G36700 222 / 3e-70 Pectin lyase-like superfamily protein (.1) AT1G05310 220 / 1e-68 Pectin lyase-like superfamily protein (.1) AT3G24130 217 / 4e-68 Pectin lyase-like superfamily protein (.1) AT5G18990 214 / 3e-67 Pectin lyase-like superfamily protein (.1) AT5G55590 214 / 1e-66 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G47500 213 / 2e-66 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037774 [exp] 577 / 0 AT3G17060 468 / 2e-166 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 254 / 4e-82 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 252 / 4e-82 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10026347 [exp] 244 / 1e-78 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10012942 [exp] 244 / 5e-78 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 239 / 6e-76 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 234 / 7e-74 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 230 / 4e-73 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 229 / 2e-72 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104800 [exp] 532 / 0 AT3G17060 477 / 5e-170 Pectin lyase-like superfamily protein (.1) Potri.018G068400 [exp] 251 / 1e-80 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 244 / 3e-78 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 245 / 5e-78 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 241 / 1e-77 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.014G117100 [exp] 231 / 3e-73 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.005G012800 [exp] 227 / 3e-72 AT5G18990 281 / 1e-93 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 221 / 1e-69 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.017G054700 [exp] 218 / 2e-69 AT3G24130 378 / 2e-132 Pectin lyase-like superfamily protein (.1) Potri.004G033700 [exp] 219 / 5e-69 AT5G18990 298 / 8e-100 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10040541 pacid=23157754 polypeptide=Lus10040541 locus=Lus10040541.g ID=Lus10040541.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCGATTAATTTTCAGATGGTGCTTGCCGTGACTCTAGTCTATGGAGTCGTATTGTTTTTGAGCGAGCAGGCTGAGGCGATGTCAACAAACG CGAAGATAGACTCTCAATTGTTGACGAGTAAGATCGGCACCAATCGGACGATCAAGGTCGATATCGACGGGGAAGGGGACTACAAAACCATACAAGAAGC TATTGATGCTGTTCCTCTTTACAATTCTCAATGGATCATTATCCACGTTAGGAAAGGAATTTACAGGGAGAAAGTACACATTCCGTGCAACAAGCCCTAC ATATTTTTGAGAGGGAATGGAAAAGGGAAAACGTACATTGTGTGGTCACAAAGTTCGACCGACAACATGGAATCAGCTACCTTCAAACTAGAATCCCCAA ATTTCATTGCGTATGGAATTAGTTTCAAGAATGAAGCGTCAGTTGGGGAAGCATTCACTTCCCAAAATCAATCGGTGGCTGCATTCGTTGGACACGACAG GGCAGCATTCTACCGCTGTGCGTTCTACAGCAACCACAACACCCTTTTCGATTACAAAGGCAGACATTACTATGACCATTGCTACATCCAAGGCTCCATC GATTTTATCTTCGGCCGAGCCAGGTCCATTTTTTATAGCTGCGAGATGTTCGTTATAGCAGACTTCAGGGTGAAGATACTGGGATCGGTGACAGCACAGA ATAGGGAAGAAGCTGACGAGAGTGGGTTTGTTTTTGTAAAGGGGAAAGTTTATGGGATTGGAAGTGTTTATTTGGGGAGAGCTAAAGGCGCTTATTCTAG AGTTGTGTTTTGCAAAACTTACCTTTCTAGAACCATTGCACCCGAGGGTTGGAGCAATTGGAGTTACGATGGAACTACAGAGAATATGTTCCAAGCAGAA TATAAATGCCATGGACCAGGTGCTGAATCAGACAAACGAGTTCCATGGGCAAAAGAGCTTACGGAAAAAGAAGCAGAGGAATACATGTCCATTGATTTCG TTGATGGCAAACAGTGGCTTCCTGTTTGGACAGAGAACTAA
AA sequence Show only first row Show all	>Lus10040541 pacid=23157754 polypeptide=Lus10040541 locus=Lus10040541.g ID=Lus10040541.BGIv1.0 annot-version=v1.0 MASSINFQMVLAVTLVYGVVLFLSEQAEAMSTNAKIDSQLLTSKIGTNRTIKVDIDGEGDYKTIQEAIDAVPLYNSQWIIIHVRKGIYREKVHIPCNKPY IFLRGNGKGKTYIVWSQSSTDNMESATFKLESPNFIAYGISFKNEASVGEAFTSQNQSVAAFVGHDRAAFYRCAFYSNHNTLFDYKGRHYYDHCYIQGSI DFIFGRARSIFYSCEMFVIADFRVKILGSVTAQNREEADESGFVFVKGKVYGIGSVYLGRAKGAYSRVVFCKTYLSRTIAPEGWSNWSYDGTTENMFQAE YKCHGPGAESDKRVPWAKELTEKEAEEYMSIDFVDGKQWLPVWTEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17060			Pectin lyase-like superfamily ...		Lus10040541 [exp]	0	1

Compare expression of checked genes

Lus10040541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.