Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19710 298 / 2e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 239 / 7e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 249 / 4e-68 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G34220 238 / 4e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G25420 209 / 5e-60 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G13340 119 / 2e-28 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 109 / 2e-25 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 108 / 1e-24 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 108 / 1e-23 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 96 / 4e-21 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000978 [exp] 1617 / 0 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10006061 [exp] 246 / 5e-71 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028724 [exp] 244 / 2e-70 AT1G34220 417 / 1e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 226 / 1e-64 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 225 / 4e-64 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041442 [exp] 175 / 7e-49 AT1G25420 270 / 6e-90 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10041468 [exp] 161 / 3e-42 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 157 / 8e-41 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10033552 [exp] 133 / 1e-33 AT1G13340 208 / 6e-64 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G149800 [exp] 482 / 4e-151 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.007G059800 [exp] 240 / 6e-69 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 235 / 3e-66 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.019G087400 [exp] 228 / 5e-64 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 217 / 4e-63 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.010G127000 [exp] 153 / 1e-39 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 134 / 1e-34 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G135700 [exp] 131 / 3e-31 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G100900 [exp] 128 / 3e-30 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G038600 [exp] 121 / 4e-28 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10040542 pacid=23157833 polypeptide=Lus10040542 locus=Lus10040542.g ID=Lus10040542.BGIv1.0 annot-version=v1.0 ATGGGATCCTTTGGCCGAGGGGGACAAATGGCGAAAACGAAAGGTGGAGATAAATCGCACAGTCGAGATCCGGTAGAGGAAGAAACCGATGGGATCCTTT GGCAGAGGGGGATAAGGATCCCACCTGCGGCATGCGAGAGCCAGTTAGGAGATCCGGAGGCTTTGACACCGTTGGTGACGGCTGTGCCGCCGGCATGCAA AACGGCATTGAAGATGGCATCATCACGAATCAAGCTGCTGAGGAACAAGCGAGATGTGCAATTGAGGCAATTGAGGAAAGACGTCGCCCAGTTACTCGCC GCCGGCCATGATCGGACTGCTAGGATTCGGGTGGAACATGTAGTTAATGAAGAAAAGACGATGGCAGCATATGACCTTATTGAGATATACTGCGAACTGA TTGTGGCCCGCTTGAACATGATTGAGTCACAAAAAATCTGCCCCGTTGACTTGAAGGAAGCAATCTCTAGTGTAATTTTTGCTACCCCTAGATGTGCAGA CTTACCTGAGTTGACGGATGTTAAAAAGAACTTGACAGCAAAATATGGAAAAGATTTCGTCTCTGCAGCCATTGAACTACGTCCAAACAGTGGGGTTAGC CGCTTACTGGTTGAGAAATTGTCTGCAAAAGCACCTAATGGTCCGGAGAAAATGAAAATTTTGAGTGCAATTGCTGAGGAACACAATGTTAAGTGGGATC CCAAATCATTTGAAGATGATATCAAGCCATCTGAGGACTTGCTCAATGGACCTGGAAAATTTCAACAGGCAAGTGTGATGCCTGCGGAAACTCATAATGC AGAGCCATCCACGAATTTCAACCAGAGCCAGGCTTCATCCCATGGCAGGCATGATGCAAGCATGAACTCATATGCCCCCAGTTCCCGCACATCTTCTCAT ATGCAATCTCCTAGTGTTGATGATTTTCGTGCAAGTAACATAAAGCCCTCAGTTGCTTCTCAGCTAGACAACAGGACTCCAGGTTCAGGACCTGAAGCTG TGGAATTTAGACATCCACATGATAGGCCAGGGAACAATTTCTCATCCGGAAGCCAACAGTGGAATATGGAGTTCAAGGATGCCACAGCTGCTGCCCAGGC TGCTGCCGAATCTGCAGAGCGAGCAAGCATGGCTGCCAGGGCTGCAGCAGAACTTTCAACTCGTGATAACATTAATTGGCAACATTCAAGAGAGCAGCAT TTAGCTTTGGGTTCTTCACCAAGAGATGAAGGGCATCATACTGGCTCTAGATTGCAAGGTGAGGAACTTTCCAAGGATATGGCAAACACATCCAAAATTA AGTCTCGTGTGTCCAATGAACAGCTTGATGACACTGGAGAAGATGAGCTAGCTGCATTGTCTGAAAGGTTCTACAATCTCAAGAGCAGAATGCCTACCTC AGAATCCAGCGGTCCTCCTGAAGTTGTTTTTCCATCTATGAGTGATCCCCACACACCGGAGACACATTCTCGAAGGAGCTCATCTGAATCAGAAAGGAGT GATATTTCAAGTGACACAAGCATAAAAAGACAGCCGATTGACAAAGAGTTACATATTGGTAGTAACATTCATGGTGGAATGAAACATGAAAGTGTTGATA GTTTTAAGGAATCGGGTGGCGAAGAACAGTCTAGTAGTCTTCTTTCGCATTCCCATTCACAGATCCCGAGGGTTGATGAGAATTTTACTTCGAACTGGGA CCATCGTGGATCAAGTGAAGATACTATTGGTGATCCTTTTTACATCAGTCAGGAAACAAGTCAAGTAAACGCCCAAGAAACAAGCTCATATGACGTTGCC ACTGCAGCTTTTGATGATTATCGTTCTGATGATGACGTCTATGATTTTCATGCTGAGGATGAAGTCAGGGACCAAAAATCCAATTTGTTTACGTCACCAG AAAGTGAAAAAACCTCTCAAATCCCAGGAAGGACAGATGCATGGAGTCCTGGGCAAAGCGTGGTTGAGTCTCCAAGAAAGTCAAGTTCGTCCTCTCTTTT TGCCTCTGAGCAGCATCCTTCTTCTGTATTTTCAGGTGGTTTAACCACCAATACAATGTCTTCGCAGCCAGGCGATTCGTTACCAGTGACTTTTGATGAC TCTGATGGTTCAAGTTCCGAAAATGAACAGGATCCAAGTGAAGCGAACGTTGGTGAACCAGGAATTACCAGCATCTCATCTCATGTTGATTCCAGAAATC TTGACCATCCCCACGATGAGAGTACTCAATGGAGGGGATCTTTACTTGCTGAAAAGGATGAGGTAAAGGAAATTAGAAAGAATTTCTCACGGCCATCTTC AGTTGACTTTGGTGACGGAATGATGCACCATCAGATTAACAAGGAAGTTGAAGCTGGTGTGAAGGCTGATACGCAATTTGGTTATTCCAATGTCCATCAA GATCGCCCTTCAATCAGATCTGCAGAATTGCAGCCCAATTCAAGTGATGTAAATGAGAAGTTGCAAACACGAGGACCTCGATCCACTAAAGATTATGGAG GTGTAAGTCAGCAGCCACGAGGATCTGTGGAGGATACTGATTCTGTCAAAGAATCCGAGTCCGAAAGTGGTTTGGAATTGAACTTTGAATTCCTGGCAGG TGGCTTCCGGAATAAGGGCTATAAACATCCACCTTATCATAGCAATGTTGCTAGCAGACCTTCACTGTCCAAGTACTCTTTGGAAGATACTGTTACTGGT ACGGAGCATTCAACATCTCTCGTAGGTGATGTTAGCTCTAGAGAGAATGGGCAAGAGACATCCAGTAAGGTAGTGAACCCAGAAGCTGGTAGAAGAATTA GCTCGAGAACTCAGGTTAGAAATGATGGTGATTCAGTTGACGAGCAGAAATACGGTAGGAAGGAAGAGCCACAGACATGGGGATCGGGAGTTGAAGTTAA CAAATACTCAGGTTCCAAAACCTACTTCGATTCTGATGATAGTGATGTTGGCGAGGAGCTTTCTAAGCAGAAATCAAGAGGGAAAGTTCCAGCGCAGGTA TTTTCTCGGCGAACGAAGGGGGCTGCTGCTTCAAATTCGAATATAAGTTCATCTGCAAAGACAAGAGGAAATATTAATGTTAGCCATGGTGCTGTAGCGA AGTCATCCTCGAGGGGTGATGAAGTTGACAGATCAGTTGAAGAAGATGAATCGACTGAGAGGAGGAAGTCTTCACTTGCTGGAAGTCATCAAAGTCATCC ATCACAGTCAAAGGAATCGCGTTGGTCAACCAGTCCGCAGGCAGGTCCAGACAAGATAGGGTCATCTGGTGTGAAACAAGCATCGAATGATGTAGCTCCG AAACAAGCATTGAAGCCTGTAGCTCCGAAAACAGGGTCAAAACAAGATTCGATGAATAGAGCTAGTCATGTTCATCCTAAACTTCCTGATTACGACAGTT TTGAAGCACACCTACTGTCTCTTCGCCAGAACCGCCAGTGA
AA sequence Show only first row Show all	>Lus10040542 pacid=23157833 polypeptide=Lus10040542 locus=Lus10040542.g ID=Lus10040542.BGIv1.0 annot-version=v1.0 MGSFGRGGQMAKTKGGDKSHSRDPVEEETDGILWQRGIRIPPAACESQLGDPEALTPLVTAVPPACKTALKMASSRIKLLRNKRDVQLRQLRKDVAQLLA AGHDRTARIRVEHVVNEEKTMAAYDLIEIYCELIVARLNMIESQKICPVDLKEAISSVIFATPRCADLPELTDVKKNLTAKYGKDFVSAAIELRPNSGVS RLLVEKLSAKAPNGPEKMKILSAIAEEHNVKWDPKSFEDDIKPSEDLLNGPGKFQQASVMPAETHNAEPSTNFNQSQASSHGRHDASMNSYAPSSRTSSH MQSPSVDDFRASNIKPSVASQLDNRTPGSGPEAVEFRHPHDRPGNNFSSGSQQWNMEFKDATAAAQAAAESAERASMAARAAAELSTRDNINWQHSREQH LALGSSPRDEGHHTGSRLQGEELSKDMANTSKIKSRVSNEQLDDTGEDELAALSERFYNLKSRMPTSESSGPPEVVFPSMSDPHTPETHSRRSSSESERS DISSDTSIKRQPIDKELHIGSNIHGGMKHESVDSFKESGGEEQSSSLLSHSHSQIPRVDENFTSNWDHRGSSEDTIGDPFYISQETSQVNAQETSSYDVA TAAFDDYRSDDDVYDFHAEDEVRDQKSNLFTSPESEKTSQIPGRTDAWSPGQSVVESPRKSSSSSLFASEQHPSSVFSGGLTTNTMSSQPGDSLPVTFDD SDGSSSENEQDPSEANVGEPGITSISSHVDSRNLDHPHDESTQWRGSLLAEKDEVKEIRKNFSRPSSVDFGDGMMHHQINKEVEAGVKADTQFGYSNVHQ DRPSIRSAELQPNSSDVNEKLQTRGPRSTKDYGGVSQQPRGSVEDTDSVKESESESGLELNFEFLAGGFRNKGYKHPPYHSNVASRPSLSKYSLEDTVTG TEHSTSLVGDVSSRENGQETSSKVVNPEAGRRISSRTQVRNDGDSVDEQKYGRKEEPQTWGSGVEVNKYSGSKTYFDSDDSDVGEELSKQKSRGKVPAQV FSRRTKGAAASNSNISSSAKTRGNINVSHGAVAKSSSRGDEVDRSVEEDESTERRKSSLAGSHQSHPSQSKESRWSTSPQAGPDKIGSSGVKQASNDVAP KQALKPVAPKTGSKQDSMNRASHVHPKLPDYDSFEAHLLSLRQNRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	0	1
AT1G09195			unknown protein		Lus10010931 [exp]	1.4	0.7485
AT3G49060			U-box domain-containing protei...		Lus10036362 [exp]	5.7	0.7507
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	8.1	0.7025
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10026408 [exp]	8.7	0.6775
AT5G18310			unknown protein		Lus10021984 [exp]	11.4	0.6804
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	12.7	0.7432
AT1G53050			Protein kinase superfamily pro...		Lus10039836 [exp]	14.3	0.7255
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	14.5	0.7163
AT3G49060			U-box domain-containing protei...		Lus10027490 [exp]	18.5	0.6395
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	29.3	0.6883

Compare expression of checked genes

Lus10040542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.