Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040545 pacid=23157670 polypeptide=Lus10040545 locus=Lus10040545.g ID=Lus10040545.BGIv1.0 annot-version=v1.0 ATGTCTGGTGAAGACAACGACCACGAGCTGTCGCCGTCCAGCAAGCGGCAGTCTCCCAACCTCTATCCTCTCCTTTCTGTCTGTCCACTTCTAGGAGGAC AAACCGACGCCACCGCTCCGGCCGATCTACTCCTCTCGGGGATCTTTTGCAGCAAAACGAAGTCTTACGGGCGAGTTGAAAAAGGTAGGTATGTTCCAAT CGCTTTTTGCTCGATTTCTGATTTCATCCAGCTCTTAACCCTAGCTACGCTTTTGGATAGAGCATTCGGGAAAGGGGTGGATAAGACTACGAAGTCTGGG GACTCGAATAGGTAG
AA sequence Show only first row Show all	>Lus10040545 pacid=23157670 polypeptide=Lus10040545 locus=Lus10040545.g ID=Lus10040545.BGIv1.0 annot-version=v1.0 MSGEDNDHELSPSSKRQSPNLYPLLSVCPLLGGQTDATAPADLLLSGIFCSKTKSYGRVEKGRYVPIAFCSISDFIQLLTLATLLDRAFGKGVDKTTKSG DSNR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040545 [exp]	0	1
AT1G55790			Domain of unknown function (DU...		Lus10032899 [exp]	2.0	0.8231
AT1G51990			O-methyltransferase family pro...		Lus10033647 [exp]	2.2	0.8954
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	2.4	0.8532
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	5.5	0.8364
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	5.9	0.7996
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	8.4	0.7931
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	8.8	0.7948
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	9.0	0.7813
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	9.5	0.7517
AT5G08450			unknown protein		Lus10004298 [exp]	10.2	0.7560

Compare expression of checked genes

Lus10040545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.