Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29510 607 / 0 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT2G19670 571 / 0 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT3G20020 251 / 3e-79 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT3G12270 218 / 7e-65 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT5G49020 187 / 3e-54 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT3G06930 183 / 2e-52 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT1G04870 179 / 3e-52 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT4G16570 61 / 8e-10 ATPRMT7 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000982 [exp] 784 / 0 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008577 [exp] 618 / 0 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10010162 [exp] 247 / 7e-79 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 247 / 1e-77 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10008664 [exp] 200 / 3e-58 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10026158 [exp] 197 / 6e-57 AT3G12270 613 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Lus10034172 [exp] 186 / 2e-53 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10043412 [exp] 186 / 3e-53 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10043295 [exp] 175 / 1e-50 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067200 [exp] 616 / 0 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.006G149400 [exp] 615 / 0 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.007G000300 [exp] 248 / 2e-78 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.001G030200 [exp] 216 / 3e-64 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.010G014600 [exp] 188 / 3e-54 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.008G222700 [exp] 187 / 5e-54 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.018G071200 [exp] 181 / 6e-53 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Potri.014G004000 [exp] 78 / 2e-16 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.003G076500 [exp] 71 / 8e-13 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06325 [flax] [poplar] PrmA Ribosomal protein L11 methyltransferase (PrmA)
Representative CDS sequence Show only first row Show all	>Lus10040546 pacid=23157768 polypeptide=Lus10040546 locus=Lus10040546.g ID=Lus10040546.BGIv1.0 annot-version=v1.0 ATGGGCCGCCGGAAGCAGAATACAAACAGTAGCAGCTCAACCAGCTTCCCAACTCCCCAGAATCAGAGCACAAACCTCCAGTTCCAGGACGCCGACGAGG ATCCGGCCATGGACAGCTCAATTCCCGATGGCTCCATTACTACTGTTCCCACCGACTTGCCCATTGCTATGGACGATGACTCTATGTCTGAAGCCAATGC AACTCTTACTGGCCCCGCTGACGAAGACGAGCAGACCAGCGCCGATTACTACTTCGATTCGTACTCTCACTTCGGTATTCACGAAGAGATGCTGAAGGAT GTGGTGAGGACTAAGACGTACCAAACTGTTATTTATCAAAATAAGTTCCTCTTCAAGGACAAAGTAGTACTTGATGTTGGTGCCGGGACTGGAATTTTGT CTTTGTTCTGTGCAAAAGCTGGTGCGGCACATGTTTATGCGGTTGAGTGCTCGCAGATGGCTAACATGGCGAAAGAAATTGTTGCATCAAACGGTCTTTC TGATGTTATAACGGTTTTAAAGGGGAAGATTGAAGAGATAGAGCTACCAGTGAATAAAGTGGATGTAATAATTTCAGAGTGGATGGGGTACTTTCTCTTG TTTGAGAACATGCTGGATACAGTTTTGTACGCTCGTGATAAATGGCTTGTCAATGATGGAATTGTGCTGCCTGATAAAGCCTCTCTTTACTTGACAGCCA TTGAGGATGCAGAGTACAAACATGACAAGATTGAATTCTGGAATAGTGTGTATGGTTTTGACATGAGCTGTATCAAGAGGCAAGTAATTATGGAACCTCT AGTTGACACTTGCGACCAAAATCAAATTGTTACAAACTCACAACTGCTAAAGACTATGGATATCTCCAACATGACTTCTGGTGATTGCTCGTTTACGGCT CCTTTCAAGCTGGTGGCAGAGCATAACGATTTCATCCATGCATTGGTAGCCTACTTTGATGTAGCGTTTACGAAATGCCACAAAATGATGGGGTTCTCCA CAGGCCCTAGGTCGAGGGCAACACATTGGAAACAGACAGTCTTATATTTGGAAGAAGTGCTGACAATATGTGAGGGAGAGGTGCTAAGTGGAAGCATGAC GGTTTCACCAAATAAGAAGAATCCTCGGGACGTTGATATATTGGTCAAATATGCGTTGAATGGGAAGCGTTGTTCTGTTTCAAGGAGTCAGCACTTCAAG ATGAGATGA
AA sequence Show only first row Show all	>Lus10040546 pacid=23157768 polypeptide=Lus10040546 locus=Lus10040546.g ID=Lus10040546.BGIv1.0 annot-version=v1.0 MGRRKQNTNSSSSTSFPTPQNQSTNLQFQDADEDPAMDSSIPDGSITTVPTDLPIAMDDDSMSEANATLTGPADEDEQTSADYYFDSYSHFGIHEEMLKD VVRTKTYQTVIYQNKFLFKDKVVLDVGAGTGILSLFCAKAGAAHVYAVECSQMANMAKEIVASNGLSDVITVLKGKIEEIELPVNKVDVIISEWMGYFLL FENMLDTVLYARDKWLVNDGIVLPDKASLYLTAIEDAEYKHDKIEFWNSVYGFDMSCIKRQVIMEPLVDTCDQNQIVTNSQLLKTMDISNMTSGDCSFTA PFKLVAEHNDFIHALVAYFDVAFTKCHKMMGFSTGPRSRATHWKQTVLYLEEVLTICEGEVLSGSMTVSPNKKNPRDVDILVKYALNGKRCSVSRSQHFK MR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10040546 [exp]	0	1
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10035414 [exp]	3.3	0.9595
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	5.5	0.9591
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10025686 [exp]	5.7	0.9423
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10031021 [exp]	6.5	0.9561
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	6.5	0.9509
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	7.7	0.9557
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	9.2	0.9511
AT3G09630			Ribosomal protein L4/L1 family...		Lus10026476 [exp]	11.4	0.9542
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019903 [exp]	12.7	0.9366
AT1G73240			unknown protein		Lus10026209 [exp]	14.7	0.9002

Compare expression of checked genes

Lus10040546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.