Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11780 154 / 6e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230900 [exp] 206 / 6e-60 AT5G11780 313 / 1e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040547 pacid=23157652 polypeptide=Lus10040547 locus=Lus10040547.g ID=Lus10040547.BGIv1.0 annot-version=v1.0 ATGGAGCTTGTCTACCCTATTTCTCTGATGGGGGAAAACTACACGAAAAAGCTAAACCGATCGATACAAGATGTCGTCGATGAAATGAGCAAAGCCACAC CGAATTTGTCTCAGTTTATTCAAGCTTTTTATGAGCTAATGCAATCGAAGCTCAACCCGCCTCTAGAAGCCATCTGGGTATACTCGGCACTTTCCTATAA CGGAAAGAAGAAGGAAAACGAGGGTCTTTCCGATAGACTGACGACGGTGAAGCAACTCTTTCAGCTCATATCGGCATGTTCCGGACCATGCAGTTCCTCA ACAAGCATTGCGTTGCTTGGTCCTGTTGTGTTCGAGCTCCATAAATTGGTGACCGAGCTGCTTGGCCAAGATTCAGAGGCTAAGAGAGTGAAAAAGCTGG TTAGAAATGTCCAGTCTTTAATTGGTTCGGTTCTCGGTTACGTCGCTTTGTGTGCAGAGGCGACGCCCGAAAAGAAAGAGTCCAACTTGATTGTGAAGTT GGCGGATTTGGTTGGTATTTGGATGGATGGGAAGGAAGAGCTTAAATCGTTTCTGCCGCTATTGAATGATCAAGCGCGGACAGAAATTGGTTTGGGAGGT TTTACTGTGATACAGTTGGCTGGGGCTGTTACTGTTGAGTTATTCTTGTTGAAGCTTTGCTTCGATTTACGGGTTGGGAGTAGAGGAGTTGATCAGTTGG AGAAGCCGCTCAAGAGTTGGATTGTCGGGTCGATTACTGGGTTTCGGAGCATTTATTTCTTTGATATTCTTTTGAGGGTGCTATTGGATCCTAGTTTACC AGTTGCTTCACTGTTGAATTCTGAAGATGAAATTTTGCTGCGAAGTGCACTTTATGAAGCGGTTATATTGGTTGAGTACTCTTTCCTCAATCCTGCTACT GCAGTTTATCTTCCTGAAGAGCATTTCCTAAGTCTTGGCTTGAAAAGATTGGTCCTCTCTCTTGAGGCTATAGAATTGTTCAGGAAAGCAGGGAACCATA AGAGAGCTGTTTCCTACTCCACTTCATTCGCTGGTTCTCCATTGCCTTTGCTGATAATCAAACATGTCACAAGCCAGATTGGCATGGAGGAAGAAGCAGG AAGATTAAAGGGATCATCTCCAAAGGCTCTTTTAGGATGGTTATTCTCCCTCGAGGGTCAAGGCGTACGAATATTTGATGATAGCATCTCCAAAACTCGT GTAAAATTCGCCCTTAATTCATATAAAGCTGATGATGCGGAAGTAGCACATAATGCCGAGGGAAACAAAATGAATTCTGAGCTTATGTTCTACATTGATA ACAAGGGAGAAATGGAAGATGGAGGTGATGAAGAAGAAGAAGAAGAAGATGAGAAGTCTGATAAAGAGATGAATGAATCCATGACAGCTGCCTTCATGGC TGCTGCTCACTCGCTAACAACGGCAGAAACCAAAGGTAAAAAACGAAAAGAAGGCCCAAGTGCTGGGAAGAAAAAAAGAACGAAACTTGCTTTGCAATCC GATACTTCTGATTCAGACCTACTTGATGATGATGGTTCAAGCAGTGCTGGTGAAGTAGAGAACCCCACCAGTGATCAGGATGCCTGA
AA sequence Show only first row Show all	>Lus10040547 pacid=23157652 polypeptide=Lus10040547 locus=Lus10040547.g ID=Lus10040547.BGIv1.0 annot-version=v1.0 MELVYPISLMGENYTKKLNRSIQDVVDEMSKATPNLSQFIQAFYELMQSKLNPPLEAIWVYSALSYNGKKKENEGLSDRLTTVKQLFQLISACSGPCSSS TSIALLGPVVFELHKLVTELLGQDSEAKRVKKLVRNVQSLIGSVLGYVALCAEATPEKKESNLIVKLADLVGIWMDGKEELKSFLPLLNDQARTEIGLGG FTVIQLAGAVTVELFLLKLCFDLRVGSRGVDQLEKPLKSWIVGSITGFRSIYFFDILLRVLLDPSLPVASLLNSEDEILLRSALYEAVILVEYSFLNPAT AVYLPEEHFLSLGLKRLVLSLEAIELFRKAGNHKRAVSYSTSFAGSPLPLLIIKHVTSQIGMEEEAGRLKGSSPKALLGWLFSLEGQGVRIFDDSISKTR VKFALNSYKADDAEVAHNAEGNKMNSELMFYIDNKGEMEDGGDEEEEEEDEKSDKEMNESMTAAFMAAAHSLTTAETKGKKRKEGPSAGKKKRTKLALQS DTSDSDLLDDDGSSSAGEVENPTSDQDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11780			unknown protein		Lus10040547 [exp]	0	1
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Lus10000590 [exp]	7.3	0.8907
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	13.9	0.8960
AT3G02650			Tetratricopeptide repeat (TPR)...		Lus10030756 [exp]	16.4	0.8763
AT5G57290			60S acidic ribosomal protein f...		Lus10010890 [exp]	25.0	0.8858
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	27.6	0.8891
AT1G09590			Translation protein SH3-like f...		Lus10030607 [exp]	29.5	0.8881
AT5G43960			Nuclear transport factor 2 (NT...		Lus10024953 [exp]	31.5	0.8816
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	36.7	0.8808
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10024576 [exp]	43.8	0.8757
AT3G16780			Ribosomal protein L19e family ...		Lus10038417 [exp]	51.6	0.8709

Compare expression of checked genes

Lus10040547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.