Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56780 264 / 2e-83 ATET2 ARABIDOPSIS EFFECTOR OF TRANSCRIPTION2, effector of transcription2 (.1) AT5G56770 117 / 3e-30 unknown protein AT4G26170 110 / 6e-26 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150000 [exp] 338 / 7e-109 AT5G56780 326 / 3e-103 ARABIDOPSIS EFFECTOR OF TRANSCRIPTION2, effector of transcription2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040548 pacid=23157716 polypeptide=Lus10040548 locus=Lus10040548.g ID=Lus10040548.BGIv1.0 annot-version=v1.0 ATGGCTGATGCCGCCAAATCCGGCGCCCTCATCGGCGGCAAATTGAAGAGAGAGGACTGTAATCGAACAAAGCACGACTCCCACTTCTCCAGATGGCAGG TTCTAATCGGGGCATCCGACTGGGCGGACTATTTATCAGGAAAGGAAGGAGCTGCGAGATACAGAGTCCATAATCTCCCTTGGGCTTCTTTCGCTGGAGT TTACGAGCTGGGAATTGCCATCGGGCGAATGGGATCAAGCCGAGGAGTGGAGAAGCACGAGATCGTGGTGGTATACCTAGGTCAAGCGGAAAATGTGAGG ACTCGACTCCAGCGGTACGGACGAACTGGTGCCCATTTGGAGAGCAGGAAGGATGATCATCATCCTACTATTACTCATAATAATAAAGGAATCAGCTTGT TTCAGGAGATCTTCTTAAGAGGCCATTCCATTGTTTTCAGATGGGCTGCTATGAAGAACAAAAAGGCTGCTGAGAAGACAGAGTCAGAGCTGTTGAACAC CTTTGATTATGCGTGGAATCGAGGAGGAAATGGCGCTCGTAGACCTGATGAAATCCTCCACAAACTTGATAGAATTTCTTCTTCATCAACAGCTGCTATT GCGAAGCTCAAAGACATTTCCAAGAGGCTAATGTCCTTTGGCCAAGCTGCAGTTGGGATCAAGATTGAAGCAATCGCCAACCCGCAAAAGCTCAAAACCG AAGATGATGCTGATGGCATTAATAAATTCTTTGCTAGGGTCTTCAAATTCAATAGGTCGAAACCCAGATTGGTTGTTTCAGACAGTTATAGAATACCAGA TGACAAGTACAACTCTGGTAATGTATGTGGGTTCATAATGGTGGATGGCATACCTTGCACAATACCGCCGGTTGTTGGAAGAAAGAGATGTCAAGAACAC AAAGGGATGAGAATCTATGGAGCTGTGAATAACACTTGCTCCTCCGCCATTAAGGCAACAACAGTAGAGGAAGATGAGCTGTCCAAGTTTACTACTGATA TTGATGGTCGTGGATCGCAATTGAATGATAAGTTATGTGGAGCAGGCTTGGTGAATGGTTCCCTATGTAGAAGATGGCCACAGAAAGGGAATGAAAGATG CTGGCAGCACCAAGGCAACAAGATTGTTAATGCCAATGCTAATGTTACTAATGATGATTTACTGTTCACTGCACCTACTTGTGGTGTTCCTTTGCTGAAT GGTTGGGCGTGTGTTAGGGCTCCTGTTCCTGGAAGGAAGAGATGCTTACAACACAAGGGGATGAGACTCCAACCTAGTGCCAGCCGTTAG
AA sequence Show only first row Show all	>Lus10040548 pacid=23157716 polypeptide=Lus10040548 locus=Lus10040548.g ID=Lus10040548.BGIv1.0 annot-version=v1.0 MADAAKSGALIGGKLKREDCNRTKHDSHFSRWQVLIGASDWADYLSGKEGAARYRVHNLPWASFAGVYELGIAIGRMGSSRGVEKHEIVVVYLGQAENVR TRLQRYGRTGAHLESRKDDHHPTITHNNKGISLFQEIFLRGHSIVFRWAAMKNKKAAEKTESELLNTFDYAWNRGGNGARRPDEILHKLDRISSSSTAAI AKLKDISKRLMSFGQAAVGIKIEAIANPQKLKTEDDADGINKFFARVFKFNRSKPRLVVSDSYRIPDDKYNSGNVCGFIMVDGIPCTIPPVVGRKRCQEH KGMRIYGAVNNTCSSAIKATTVEEDELSKFTTDIDGRGSQLNDKLCGAGLVNGSLCRRWPQKGNERCWQHQGNKIVNANANVTNDDLLFTAPTCGVPLLN GWACVRAPVPGRKRCLQHKGMRLQPSASR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56780		ATET2	ARABIDOPSIS EFFECTOR OF TRANSC...		Lus10040548 [exp]	0	1
AT4G28250		ATHEXPBETA1.6, ...	expansin B3 (.1.2)		Lus10039816 [exp]	4.0	0.7110
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000951 [exp]	36.8	0.7099
AT1G69160			unknown protein		Lus10026677 [exp]	94.3	0.6424
AT3G22970			Protein of unknown function (D...		Lus10006634 [exp]	97.1	0.6486
					Lus10043166 [exp]	265.6	0.6133

Compare expression of checked genes

Lus10040548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.