Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19600 673 / 0 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT5G11800 647 / 0 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT5G51710 533 / 0 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT4G04850 87 / 2e-17 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT4G00630 77 / 2e-14 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 72 / 7e-13 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008002 [exp] 773 / 0 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10007999 [exp] 567 / 0 AT2G19600 569 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10031106 [exp] 539 / 0 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031687 [exp] 497 / 4e-171 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10008000 [exp] 136 / 7e-37 AT5G51710 149 / 3e-42 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10020485 [exp] 81 / 7e-16 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10007104 [exp] 81 / 1e-15 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10018844 [exp] 55 / 1e-07 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G054100 [exp] 660 / 0 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.006G230400 [exp] 659 / 0 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.012G130500 [exp] 560 / 0 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 556 / 0 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.009G080800 [exp] 85 / 4e-17 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.014G080800 [exp] 77 / 2e-14 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 72 / 5e-13 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10040549 pacid=23157774 polypeptide=Lus10040549 locus=Lus10040549.g ID=Lus10040549.BGIv1.0 annot-version=v1.0 ATGAGATTGCTCTTAGCTCCGGCTGTACTTTGCGCTCTTCTTCTCTTCTTCTTGCCCTCTGAATCCGCCCATGAAGAGTGGAACTCAACGAAAGTAAATG CAAGCATAGATTCCAACTCTACTGGACTCAGATCCAGGGAGGACACCTTCGCTTTCATGATCGATCGCGCACTGGAGAAGGAGTTCAACGAGACAGAGAA AATTGAAGCCACTGATCCGGACAGCTTCAATAACAGCGTTGCCGGGCAGCAGGCAGTTCTGGAGACAGTGGCTAGGGTTACAACGAAGAAAAATGAATCT AAGGAGGAGAAGTCTTTTCAGTTTCATAATGTTTTCAATTTGGACAATGACAATCGTGCAGAAGATGCCGCACGTTTAATTGATCGAAAGGATAATGTCT TTATCATATCAAATCCGAAGTCCAAATATCCTGTGCTACAACTTGACTTAACTTTGATATCAGATCTGGTGGTTGTCATTGTGTCTGCTGCTTGCGGGGG AGTAGCATTTGCTTGTGCTGGTCAACCGGTATTTTCCGGATACCTGCTTGCAGGGTCTGTGATTGGGCCAGGGGGATTCAATGTTGTAAGCGAAATGGTG CAAGTTGAGACAGTTGCACAATTTGGTGTCATATTCCTTCTGTTTGTCCTGGGTCTGGAGTTTTCCATCACCAAGCTTCGTGTTGTCCGAGCAGTTGCAG TTGTTGGAGGTCTTCTCCAGATTTCGCTCTTTATGTGCCTTTGTGGATTAACAGCCTCGGTATGCGGGGGTAAGCCTTCTGAGGGCATCTTTGTAGGTGC ATTCCTCTCAATGTCTTCAACTGCAGTGGTTCTAAAGTTCTTGATGGAAAAAAATAGCATAAATACCCTCTATGGCCAGGTCACTGTTGGTACCCTCATT CTGCAGGATTGTGCAGTTGGTCTGCTGTTTGCTTTACTTCCTGTTCTTGGTGGTACTTCTGGTGTTCTTCAGGGAGTGATATCCATGACTAAGTTGTTAG TGCTGCTGCTTGCATTTTTGGCTACTTTAACAATATTGTCTCGTACCTGTGTGCCATGGTTCCTTAAGCTTATGATAAGCTTATCGTCTCAGACTAATGA ACTCTATCAGCTGGCATCAGTGGCGTTCTGCCTGCTTGTCGCATGGTGTAGTGACAAGTTGGGTCTCAGCCTTGAACTAGGATCATTTGCTGCAGGTGTG ATGATATCCACGACTGATTTCGCGCACCATACACTCGAGCAAGTAGAACCAATTCGCAACTTCTTTGCAGCTCTGTTCTTGGCAAGCATTGGGATGTTGA TAGATGTCCATTTCCTATGGAATCATGTTGATATACTACTTGCTTCGGTACTGTTAGTGATTGTTGTCAAAACTATTATTACTACATCTGTTGTCAAGGG ATTTGGATACAACAATAAGACTGCACTTCTTGTTGGGATGTCTCTCGCACAAATTGGGGAATTTTCCTTTGTGATTCTCAGTCGTGCTTCTAATATTCAT CTAATTGAGGGTAAATTATATCTATTGCTTCTTGGAACGACAGCCCTCAGTCTGGTAACGACACCATTTCTTTTCAAGCTTATTCCAGCAGTGGTACATC TTGGTGTGCTGTTGCGGTGGTTTCCTCCGGAAAGCATTCATGAGATAGGGTATAAAGGAGAAAGCTTTCGGTCAGAGAGTGCTAAGCGCATTAATTTGAT GGTCCACGGAAATCACCATCCATGA
AA sequence Show only first row Show all	>Lus10040549 pacid=23157774 polypeptide=Lus10040549 locus=Lus10040549.g ID=Lus10040549.BGIv1.0 annot-version=v1.0 MRLLLAPAVLCALLLFFLPSESAHEEWNSTKVNASIDSNSTGLRSREDTFAFMIDRALEKEFNETEKIEATDPDSFNNSVAGQQAVLETVARVTTKKNES KEEKSFQFHNVFNLDNDNRAEDAARLIDRKDNVFIISNPKSKYPVLQLDLTLISDLVVVIVSAACGGVAFACAGQPVFSGYLLAGSVIGPGGFNVVSEMV QVETVAQFGVIFLLFVLGLEFSITKLRVVRAVAVVGGLLQISLFMCLCGLTASVCGGKPSEGIFVGAFLSMSSTAVVLKFLMEKNSINTLYGQVTVGTLI LQDCAVGLLFALLPVLGGTSGVLQGVISMTKLLVLLLAFLATLTILSRTCVPWFLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGV MISTTDFAHHTLEQVEPIRNFFAALFLASIGMLIDVHFLWNHVDILLASVLLVIVVKTIITTSVVKGFGYNNKTALLVGMSLAQIGEFSFVILSRASNIH LIEGKLYLLLLGTTALSLVTTPFLFKLIPAVVHLGVLLRWFPPESIHEIGYKGESFRSESAKRINLMVHGNHHP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	0	1
AT5G40740			unknown protein		Lus10014617 [exp]	1.4	0.8212
AT5G28850			Calcium-binding EF-hand family...		Lus10029614 [exp]	4.2	0.8210
AT4G38350			Patched family protein (.1.2)		Lus10016019 [exp]	6.5	0.7657
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10007999 [exp]	7.9	0.8170
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10041607 [exp]	8.5	0.7883
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	8.5	0.7531
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	10.2	0.7540
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	11.1	0.8154
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	12.0	0.7723
AT1G73660			protein tyrosine kinase family...		Lus10009062 [exp]	14.5	0.7645

Compare expression of checked genes

Lus10040549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.