Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29590 429 / 3e-152 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G01660 164 / 7e-49 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022301 [exp] 164 / 2e-48 AT3G01660 345 / 5e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003648 [exp] 94 / 7e-23 AT3G01660 214 / 3e-70 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037890 [exp] 45 / 6e-05 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10038599 [exp] 44 / 8e-05 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G150500 [exp] 467 / 4e-167 AT4G29590 415 / 9e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G340900 [exp] 163 / 2e-48 AT3G01660 361 / 3e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10040550 pacid=23157752 polypeptide=Lus10040550 locus=Lus10040550.g ID=Lus10040550.BGIv1.0 annot-version=v1.0 ATGGTATATCGTTTTGGACTGTTGCACAATCCAAACACACCTATTTCAGCAGTTGCCAATCGAATAGGTATTTCTCCCAGCTTCTGGGTTTCACCTAGTC TCTGTGCTTGTGGGTTCGCTACTGTCCACGGCAAAAGCAGGTTTACCGCAAACCGCAGGCTTGTGATAGGCTTGGGAGCTTCGTTTCTCTCACAGTTTCT TGGTATGGCTGGCCAAGTCAGTAATGTCAAGCATTTCGTTGCCTCAGCTAGGCAGAAGGGTGCCGTCGAAGAAGTATTGAAGAATGTTGCTTGGCCGGAG CAGTTCCCCTTCAAGGAGGAAGATTTTCAGAGATTTGATGAGTCATCAGATACATCGTTCTATGAAGCTCCACGATTTGTTACACACATTGATGATCCAG CAATTTCCGCACTGACAAAGTACTACTCAGAGGTTCTCCCTCCTAGCAATACCCTGGGAGTAAGCATCTTGGACATGTGTAGCAGTTGGGTCAGTCATTA CCCAAAAGGATACAAGCAAGGTCGTATAGTTGGGATGGGAATGAATGAAGAAGAACTCAAACGGAATCCTGTTCTGACAGAGTACATCCTGCAAGATCTG AATGTGAACCCAAAACTGCCATTCGATGACAATTCATTCGACGTGATTACTAATGTGGTCAGCGTGGATTACCTGACAAAACCACTCGAGGTATTCAAGG AGATGTGCCGCATACTGAAGCCAGGTGGAGTAGCCATAATGAGCTTTTCGAACCGTTGCTTTTTCACGAAGGCAATCTCAATATGGACATCAACTGGGGA TGCTGATCATGTTATGATTGTTGGGTCATATTTCCATTATGCTGGAGGGTTTGAACCGCCTCAGGCTGTGGATATATCTCCAAACCCAGGACGTTCAGAT CCAATGTACATTGTTTACTCTAGGAAGGCCTCCCCAGAGGTTTAG
AA sequence Show only first row Show all	>Lus10040550 pacid=23157752 polypeptide=Lus10040550 locus=Lus10040550.g ID=Lus10040550.BGIv1.0 annot-version=v1.0 MVYRFGLLHNPNTPISAVANRIGISPSFWVSPSLCACGFATVHGKSRFTANRRLVIGLGASFLSQFLGMAGQVSNVKHFVASARQKGAVEEVLKNVAWPE QFPFKEEDFQRFDESSDTSFYEAPRFVTHIDDPAISALTKYYSEVLPPSNTLGVSILDMCSSWVSHYPKGYKQGRIVGMGMNEEELKRNPVLTEYILQDL NVNPKLPFDDNSFDVITNVVSVDYLTKPLEVFKEMCRILKPGGVAIMSFSNRCFFTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSD PMYIVYSRKASPEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	0	1
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	1.4	0.9647
AT2G33180			unknown protein		Lus10023686 [exp]	2.8	0.9581
AT1G50900		LTD, GDC1	LHCP translocation defect, Gra...		Lus10011151 [exp]	2.8	0.9636
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10035036 [exp]	3.9	0.9630
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	5.8	0.9506
AT5G53490			Tetratricopeptide repeat (TPR)...		Lus10007788 [exp]	6.0	0.9574
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Lus10001826 [exp]	6.9	0.9512
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Lus10042897 [exp]	8.0	0.9620
AT1G64150			Uncharacterized protein family...		Lus10024713 [exp]	8.3	0.9454
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10038404 [exp]	8.8	0.9595

Compare expression of checked genes

Lus10040550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.