Plant FIBer expression Database

Lus10040551 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G19580 306 / 3e-105 TET2 tetraspanin2 (.1)
AT5G46700 184 / 3e-57 TRN2, TET1 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
AT3G45600 166 / 7e-50 TET3 tetraspanin3 (.1)
AT2G23810 158 / 3e-47 TET8 tetraspanin8 (.1)
AT4G28050 154 / 1e-45 TET7 tetraspanin7 (.1)
AT5G60220 155 / 2e-45 TET4 tetraspanin4 (.1)
AT4G30430 147 / 7e-43 TET9 tetraspanin9 (.1)
AT4G23410 141 / 2e-40 TET5 tetraspanin5 (.1)
AT1G18520 137 / 4e-39 TET11 tetraspanin11 (.1)
AT3G12090 120 / 2e-32 TET6 tetraspanin6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007998
[exp]
406 / 1e-144 AT2G19580 369 / 6e-130 tetraspanin2 (.1)
Lus10008563
[exp]
337 / 3e-117 AT2G19580 411 / 1e-146 tetraspanin2 (.1)
Lus10001668
[exp]
199 / 6e-63 AT5G46700 384 / 8e-136 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Lus10017336
[exp]
194 / 3e-61 AT5G46700 389 / 5e-138 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Lus10023216
[exp]
172 / 9e-53 AT2G23810 376 / 1e-132 tetraspanin8 (.1)
Lus10019965
[exp]
170 / 8e-52 AT2G23810 376 / 1e-132 tetraspanin8 (.1)
Lus10008891
[exp]
169 / 3e-51 AT2G23810 377 / 5e-133 tetraspanin8 (.1)
Lus10038473
[exp]
167 / 1e-50 AT3G45600 446 / 9e-160 tetraspanin3 (.1)
Lus10015494
[exp]
164 / 3e-49 AT2G23810 370 / 2e-130 tetraspanin8 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G150400
[exp]
316 / 5e-109 AT2G19580 367 / 5e-129 tetraspanin2 (.1)
Potri.003G093000
[exp]
210 / 2e-67 AT5G46700 369 / 4e-130 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Potri.001G141400
[exp]
199 / 2e-63 AT5G46700 367 / 3e-129 TORNADO 2, TETRASPANIN 1, Tetraspanin family protein (.1)
Potri.006G177900
[exp]
171 / 3e-52 AT2G23810 317 / 4e-109 tetraspanin8 (.1)
Potri.009G015100
[exp]
164 / 1e-49 AT3G45600 388 / 7e-137 tetraspanin3 (.1)
Potri.018G099800
[exp]
162 / 7e-49 AT2G23810 322 / 3e-111 tetraspanin8 (.1)
Potri.010G220300
[exp]
147 / 6e-43 AT3G12090 399 / 2e-141 tetraspanin6 (.1)
Potri.008G041600
[exp]
147 / 8e-43 AT3G12090 397 / 2e-140 tetraspanin6 (.1)
Potri.015G055700
[exp]
124 / 6e-34 AT1G18520 196 / 6e-62 tetraspanin11 (.1)
Potri.001G107200
[exp]
107 / 8e-28 AT1G63260 416 / 1e-148 tetraspanin10 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0347 Tetraspannin PF00335 Tetraspanin Tetraspanin family
Representative CDS sequence
>Lus10040551 pacid=23157643 polypeptide=Lus10040551 locus=Lus10040551.g ID=Lus10040551.BGIv1.0 annot-version=v1.0
ATGGCAGTATCAAACACCCTAACAGCAATCCTAAACTTGATAGCTTTCCTATGTTCCATCCCAATAATAGCATCCGGAATATGGCTGGCATCCCAACCTG
ACAACGAGTGCATCCACTTCTACCGTTGGCCACTCGTCCTCCTCGGAGTCCTTGTCCTAGTAGTCTCCCTCACTGGCTTCGTCGGCGGCTACTGCTACAA
GGAATCCCTGCTGGCCTTCTACCTCTGCTGTATGGCCATACTCATCATCCTTCTCCTTGTACTCCTGGTTTTCGCCTTCGTGGTCACTCGTCCTGATGGC
AGCGTCTACATCCCTGGCCGTGGCTACAAGGAGTTTCGAATCGAAGGGTTCTCCTCCTGGCTCAGGGATCATGTCGTTGACTCCAGAGACTGGGTTGGCA
TTCGTGCTTGCCTCGCTGAATCAAGTGCTTGTCCAAAGTTGGGCACGAGATACTTCTCTGCTGACCACTTCTTTGCCGGTCACATCTCTCCTATCCAGTC
GGGGTGTTGCAAGCCTCCAACGGTATGTGGGTACAATTACGTGAACCCGACCCTGTGGGTGAACCCGACAAACCCGACAGCGGATCCAGACTGCTACATG
TGGAGCAACGACCAGAAGCAGCTGTGCTACAACTGCAACTCGTGCAAAGCAGGGTTGTTAGGCAACCTGAGGAGAGAAGGGAGGAAAATCAATACCATTC
TCATTGTAGCTCTAGTTCTCCTCATCTTCGTCTATGTGGTTGCTTGCTTTGCTTTCAAGAATGCACAATTGGGTCCCTCACACCGTGCTAATTCCAAGTA
A
AA sequence
>Lus10040551 pacid=23157643 polypeptide=Lus10040551 locus=Lus10040551.g ID=Lus10040551.BGIv1.0 annot-version=v1.0
MAVSNTLTAILNLIAFLCSIPIIASGIWLASQPDNECIHFYRWPLVLLGVLVLVVSLTGFVGGYCYKESLLAFYLCCMAILIILLLVLLVFAFVVTRPDG
SVYIPGRGYKEFRIEGFSSWLRDHVVDSRDWVGIRACLAESSACPKLGTRYFSADHFFAGHISPIQSGCCKPPTVCGYNYVNPTLWVNPTNPTADPDCYM
WSNDQKQLCYNCNSCKAGLLGNLRREGRKINTILIVALVLLIFVYVVACFAFKNAQLGPSHRANSK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G19580 TET2 tetraspanin2 (.1) Lus10040551
[exp]
0 1
AT2G42610 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10,... Lus10007272
[exp]
2.0 0.9063
AT4G31330 Protein of unknown function, D... Lus10020172
[exp]
2.4 0.8729
AT4G35550 HD HB-4, WOX13, AT... WUSCHEL related homeobox 13 (.... Lus10023561
[exp]
3.5 0.8547
AT5G55190 RAN3, ATRAN3 RAN GTPase 3 (.1) Lus10043297
[exp]
3.9 0.8575
AT1G29950 bHLH basic helix-loop-helix (bHLH) ... Lus10004926
[exp]
5.7 0.8737
Lus10002550
[exp]
6.5 0.8091
AT5G25280 serine-rich protein-related (.... Lus10038100
[exp]
8.7 0.8632
AT3G60580 C2H2ZnF C2H2-like zinc finger protein ... Lus10004724
[exp]
9.4 0.8487
AT1G13130 Cellulase (glycosyl hydrolase ... Lus10006462
[exp]
9.9 0.8518
AT1G13130 Cellulase (glycosyl hydrolase ... Lus10011404
[exp]
13.8 0.8445

Lus10040551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.