Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29670 263 / 3e-86 ACHT2 atypical CYS HIS rich thioredoxin 2 (.1.2) AT4G26160 232 / 3e-74 ACHT1 atypical CYS HIS rich thioredoxin 1 (.1) AT1G08570 156 / 7e-45 ACHT4 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) AT2G33270 151 / 1e-42 ACHT3 atypical CYS HIS rich thioredoxin 3 (.1) AT5G61440 148 / 8e-42 ACHT5 atypical CYS HIS rich thioredoxin 5 (.1) AT1G55190 88 / 3e-20 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT1G17700 77 / 3e-16 PRA1.F1 prenylated RAB acceptor 1.F1 (.1) AT3G13710 74 / 3e-15 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT3G13720 73 / 6e-15 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G56110 73 / 1e-14 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007994 [exp] 721 / 0 AT4G29670 268 / 6e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Lus10019087 [exp] 162 / 9e-47 AT1G08570 223 / 4e-73 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10015711 [exp] 160 / 4e-46 AT1G08570 220 / 2e-71 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10002640 [exp] 158 / 5e-45 AT1G08570 320 / 2e-110 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10020254 [exp] 158 / 6e-45 AT1G08570 318 / 1e-109 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10026878 [exp] 154 / 2e-43 AT1G08570 332 / 7e-115 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10003437 [exp] 152 / 9e-43 AT1G08570 324 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Lus10034363 [exp] 97 / 6e-23 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10005088 [exp] 96 / 1e-22 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G066500 [exp] 305 / 9e-103 AT4G29670 253 / 3e-85 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.006G150700 [exp] 299 / 2e-100 AT4G29670 259 / 9e-88 atypical CYS HIS rich thioredoxin 2 (.1.2) Potri.019G031900 [exp] 156 / 4e-44 AT1G08570 325 / 4e-112 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.013G061200 [exp] 153 / 6e-43 AT1G08570 295 / 4e-100 atypical CYS HIS rich thioredoxin 4 (.1.2.3.4) Potri.003G035200 [exp] 87 / 1e-19 AT1G55190 161 / 2e-50 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.005G054700 [exp] 78 / 2e-16 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.005G219100 [exp] 72 / 3e-14 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 71 / 5e-14 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 69 / 3e-13 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.019G054800 [exp] 65 / 3e-12 AT3G02730 204 / 1e-67 thioredoxin F-type 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin CL0172 [flax] [poplar] PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10040554 pacid=23157816 polypeptide=Lus10040554 locus=Lus10040554.g ID=Lus10040554.BGIv1.0 annot-version=v1.0 ATGGCAGATGCTATTCGATTACTATCATTTGGGCTTCCATCCTCGCTGCTTACAACTCCGAGCTTGAATTCCTCTTCCCAACCGTCTATTTCATCCTTGA GCGCAGTTTCAGATAGGAAGGCTGCCCCCGTTTTGCTCATCTCTTCTGCTGGTGTTTCTCGGTTTCTTCTTTCTCCCCGGAGGCATTTGCTCTGCTTAAA GGTACATGCTACGATTACTGAGACTGATCAGCCGAAATGGTGGGAGAGAAATGCAGGACCAAATATGATTGATATTCATTCAACTGAAGAATTCTTAAGT GCCTTAAGTGAAGCTGGAGAGAAATTGGTTATTGTTGAATTTTATGGAACATGGTGCGCTTCCTGCCGAGCATTGTTCCCCAAGCTGTGCAAAACTGCGC AAGAACACCCAGAGATTGTATTCCTAAAGGTGAACTTCGATGAAAACAAGCCAATGTGTAAAAGCTTGAATGTAAAAGTCCTTCCTTTCTTCCATTTCTA CCGGGGTTCGGAAGGACAATTAGAATCCTTCTCTTGTTCACTCGCTAAGTTTCAAAAGATAAAAGCAGCGATTGCGACACACAATACAGAACGTTGCAGC ATTGGTCCACCCAAGGGCGTAGGAGGAATCACTCTCGATTCAGTTGCTGCTGCTCCAAAGAACAATCCTCCTCCATCGGGAGAAATGACGAGATACGGAA CAATACAATCCCATCCACAATCACAGCCGCTCCCAGGAATTTCGTCAATCTCTCTTCAAAGTATAAGATCCACCTTCGAAAACCTCATTGCCACAGCAAA ACCATGGAAGCTAATGATCCAACCCCAATCCCTTACCTTCCCTTCCACATTAAACCAATCACTCGACAGAATTAACGTCAACGCTGCTTTCTTCCGCAGC AATTACGCCATCCTCGCTTCCTGTGCTCTCTTCATCTCCTTGATATGGCATCCCTTTTCCTTCGTCGTCTCCCTCCTCCTTGCCGCGGCTTGGTTCTTCC TCTACCTTCATCGGGAAGATGGCAATCCCTTGGTGATTAATGGCCAAGTCGTCGGTCAGAAAACTATTCTCTCATCGCTGTTGTCGGCCACGATGCTGGT GCTTTTCTGTACGGAGGTAACGGATGACATCGTCGTCGGACTCTTCGCAGGGGTAGTGTTGTTCGTTGCCCATGGGGCGATGAGGGAGACAGATGACCTG CCAATGATGATCGGCGGTGAAGGAGTAGTGGACGATCTAGAAGCCAATACATCGACGTCGGTTGTAGTTCCGGGCTCATACCGTGATATGGGCTATAATA GTGTAAATGCAGGGCCTAAGCTTCTCAGGTGA
AA sequence Show only first row Show all	>Lus10040554 pacid=23157816 polypeptide=Lus10040554 locus=Lus10040554.g ID=Lus10040554.BGIv1.0 annot-version=v1.0 MADAIRLLSFGLPSSLLTTPSLNSSSQPSISSLSAVSDRKAAPVLLISSAGVSRFLLSPRRHLLCLKVHATITETDQPKWWERNAGPNMIDIHSTEEFLS ALSEAGEKLVIVEFYGTWCASCRALFPKLCKTAQEHPEIVFLKVNFDENKPMCKSLNVKVLPFFHFYRGSEGQLESFSCSLAKFQKIKAAIATHNTERCS IGPPKGVGGITLDSVAAAPKNNPPPSGEMTRYGTIQSHPQSQPLPGISSISLQSIRSTFENLIATAKPWKLMIQPQSLTFPSTLNQSLDRINVNAAFFRS NYAILASCALFISLIWHPFSFVVSLLLAAAWFFLYLHREDGNPLVINGQVVGQKTILSSLLSATMLVLFCTEVTDDIVVGLFAGVVLFVAHGAMRETDDL PMMIGGEGVVDDLEANTSTSVVVPGSYRDMGYNSVNAGPKLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10040554 [exp]	0	1
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	1.0	0.9344
AT2G24395			chaperone protein dnaJ-related...		Lus10020173 [exp]	1.4	0.9187
AT2G20725			CAAX amino terminal protease f...		Lus10018585 [exp]	2.4	0.8919
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10021440 [exp]	6.9	0.8793
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	8.4	0.8865
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	8.5	0.8404
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	8.8	0.8747
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	9.2	0.8725
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	10.1	0.8838
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	10.5	0.8748

Compare expression of checked genes

Lus10040554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.