Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80680 605 / 0 NUP96, SAR3, MOS3, PRE PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) AT1G10390 169 / 6e-43 Nucleoporin autopeptidase (.1.2) AT1G59660 139 / 2e-33 Nucleoporin autopeptidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007993 [exp] 887 / 0 AT1G80680 1280 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10033254 [exp] 136 / 2e-32 AT1G10390 1023 / 0.0 Nucleoporin autopeptidase (.1.2) Lus10008288 [exp] 136 / 2e-32 AT1G10390 1013 / 0.0 Nucleoporin autopeptidase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G180100 [exp] 690 / 0 AT1G80680 1272 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Potri.011G148800 [exp] 156 / 6e-39 AT1G10390 606 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.001G453200 [exp] 150 / 6e-37 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12110 [flax] [poplar] Nup96 Nuclear protein 96 CL0661 [flax] [poplar] Gain PF04096 [flax] [poplar] Nucleoporin2 Nucleoporin autopeptidase
Representative CDS sequence Show only first row Show all	>Lus10040555 pacid=23157699 polypeptide=Lus10040555 locus=Lus10040555.g ID=Lus10040555.BGIv1.0 annot-version=v1.0 ATGGGCTCCTCCATTCTCGCTCCGTCTCTAGGGAGTTCCTGCGGGGTGGAGTTTGATGTCCCATCTTCCGATTCACGAACACAGTACAAGAGAAGACGAA TTTCCTCCCGCCGGGACTTAGGAGAGGTAGAAGCTTCGTTACCCCTTTTAACTTCACCAGATTATTACACGGAGCCTTGCTTGGCCGATTTGGCTGCCAG GGAATTTCTAGATCCTGGTTATTGTGGTCGAGTTCCCAATTTCACTGTTGGGAAGTTTGGTTATGGGTGTGTCAAGTTTCGTGGAAACACTGATGTTAGG AAGCTGGAAGTGGATCGCATTGTTAAGTTCAATAGGCATGAAATTGTCGTATATGGAGATGAAAGTACCAAGCCTGCAGTTGGTCAGGGGCTCAACAAGC CTGCCGAAGTGACTCTGAAATTAAAAATAAGACCATTTGATTCATCTAAACAGCATTACAATGCTATTGTGAAGAAACTGAGGTTAAGCTTGGAGAGGCA GGGAGGTAGGTTCATTTCTTTCAACCCCAATAATGGTAATTGGAGTTTCTTAGTCCAACATTTTAGTCGATTTGGATTGACTGAAGATGATGAAGAAGAC ATCGCTATGGATGATGTTGAGGAAGTTCATGATCCTTCCAAGATCAACGATGCTGAGATCATGGAGAATGGGGAATCACGAGAAGAAATTGAACCTACTG GGCCTATGCTTTATCATTCTCTACCTGCATATCTTGGCCTTGACCCGATAAAGATGAGAGAGATGAAGATGTTGATGTTTCCTGTTGAGGATGAGGAAGA GGTCGAGGATTTGACTGACCTCTCTCATCCCATCTTGTCGAGAAGTAAAGAACATATGAGACGTTCATTGCTGAATAGTTCTCAGAGAACGAGTCACAGA TCTAGTATGCCTGTGGTGAGGAAACCACCATTGGCTCTGCTTGAATACAATCCTGCTGGGAACAACTCAGATTCTCCTGGAAACATATTAATGGCCCAGC AAACCAAGGGCTTGTCTTTAAAGCCAATTAGAGGTGAGGGCTTCAAGCTGAACCTAGAACGCCAGACACCAGTAAGTGGAAGTCATTCTCGCAACATAGT TGATGCTGGTTTGTTCATGGGCAAATCATTCCGCGTCGGGTGGGGTCCAAATGGAGTTCTTCTCCATTCGGGTGCTCCTGCTGGTGGATCGACTGTTAAT CGTGATGATATTGCATACCAGCTTGATCTTTGGAGGACTAATGGGCTGGATTTCAATTTTGTTGAGAAGGAGAGGACTAGGCTTTATGAGCTGCTTTCTG GTAATATTCACAATGCCTTGGAGGGTGTTAAAATTGACTGGAAAAGATTCTTAGGATTGTTGATGTGGTATCGTCTACCACCTGATACACCATTGCCTGT CATTTTCCAAAATTATCAACTTCTCCTTCATGAAGGTAAAGCTCCATTTCCTCTTCCAATTTATATTGACGAAGGGCCGGTGGAAGAGGCACTGGGAGTT ATGGAAAAGAACATTGATCTCACATATTATCTCATGCTTCTTCATGCCAATGGAGAGGGTCAATTTGGCTATCTGAAGACCATGCTCAGTAATTTCTCTT CAACATATGATCCACTAGACTACCATATGATTTGGCATCAGAGAGCAGTGCTAGAGGCAGCTGGTGTGTTTACTTCTAATGATCTTCAAGTGCTTGACAT GGGGATTGTTTCCCAGTTGTTGTGTACTGGACAATGTCATTGGGCCATATATGTGGTGCTTCACATGCCACAGTGTGATGATTATCCACATTTCCATGCT ACAGTTATTCGGGAAATATTATTTCAGTATTGTGAAACTTGGAGTTCAGATGAATCGCAACACCAATTCATTCAGAACCTTGAAATCCCATCAGAGTGGC TGCATGAAGCTATGGCAGTATATTTCAGTTATTACGGGAATCTGTCCAAGGCCCTTGAACACTTCCTTGAATGTGCAAAATGGCAGAAGGCTCATTCTAT TTTTACAACCTCGGTTGTTCATACATTGTTTTTGTCTGGTGATCATTCAGAAGTTTGGAGGCTTGCTACATTAATGGAGGAGCACAAATCTCAAATTGAG GACTGGGAGCTGGGAGCAGGAATCTACATTTCCTTCCTCATGCTTAAAAGTTCATTTGAAGAGGATAACAATACAATGAACGAACAGGATCCTCTTGCAA ACAAAATTTCTGATTGTGACGACTTCCTTAGTCAACTTAATGAATCTTCGGCAGTTTTGGGTGACCGGTTGCCAACGGATGCAAGGATTGCATACTCAAA GATGGGAGAGGATGTCTCAGAGATGCTGCTCTCAATTAGTAGTTTGGGCGAGTCACGGGACAGCCAGTTGAAATGCTTTGATACAGTTCTCAAGGCTCCA GTACCTGAAGATGTATGCTCAAATCATCTGCAAGATGCCGTCTCTCTTTTTACATTTTATCTATCGGAGATGGCCGCACAATCCGTACAAGTGTTGGCTT CTGGTTCGACAATAGGAGGATAG
AA sequence Show only first row Show all	>Lus10040555 pacid=23157699 polypeptide=Lus10040555 locus=Lus10040555.g ID=Lus10040555.BGIv1.0 annot-version=v1.0 MGSSILAPSLGSSCGVEFDVPSSDSRTQYKRRRISSRRDLGEVEASLPLLTSPDYYTEPCLADLAAREFLDPGYCGRVPNFTVGKFGYGCVKFRGNTDVR KLEVDRIVKFNRHEIVVYGDESTKPAVGQGLNKPAEVTLKLKIRPFDSSKQHYNAIVKKLRLSLERQGGRFISFNPNNGNWSFLVQHFSRFGLTEDDEED IAMDDVEEVHDPSKINDAEIMENGESREEIEPTGPMLYHSLPAYLGLDPIKMREMKMLMFPVEDEEEVEDLTDLSHPILSRSKEHMRRSLLNSSQRTSHR SSMPVVRKPPLALLEYNPAGNNSDSPGNILMAQQTKGLSLKPIRGEGFKLNLERQTPVSGSHSRNIVDAGLFMGKSFRVGWGPNGVLLHSGAPAGGSTVN RDDIAYQLDLWRTNGLDFNFVEKERTRLYELLSGNIHNALEGVKIDWKRFLGLLMWYRLPPDTPLPVIFQNYQLLLHEGKAPFPLPIYIDEGPVEEALGV MEKNIDLTYYLMLLHANGEGQFGYLKTMLSNFSSTYDPLDYHMIWHQRAVLEAAGVFTSNDLQVLDMGIVSQLLCTGQCHWAIYVVLHMPQCDDYPHFHA TVIREILFQYCETWSSDESQHQFIQNLEIPSEWLHEAMAVYFSYYGNLSKALEHFLECAKWQKAHSIFTTSVVHTLFLSGDHSEVWRLATLMEEHKSQIE DWELGAGIYISFLMLKSSFEEDNNTMNEQDPLANKISDCDDFLSQLNESSAVLGDRLPTDARIAYSKMGEDVSEMLLSISSLGESRDSQLKCFDTVLKAP VPEDVCSNHLQDAVSLFTFYLSEMAAQSVQVLASGSTIGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80680		NUP96, SAR3, MO...	PRECOCIOUS, MODIFIER OF SNC1,3...		Lus10040555 [exp]	0	1
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	4.6	0.9201
AT3G13682		LDL2	LSD1-like2 (.1)		Lus10038587 [exp]	6.7	0.8891
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10012446 [exp]	7.9	0.8607
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10023288 [exp]	8.9	0.9028
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10006411 [exp]	12.1	0.8678
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	13.3	0.9110
AT1G04210			Leucine-rich repeat protein ki...		Lus10041180 [exp]	13.7	0.8983
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	20.4	0.9005
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	23.3	0.9058
AT5G64270			splicing factor, putative (.1)		Lus10033347 [exp]	23.9	0.9016

Compare expression of checked genes

Lus10040555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.