Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26150 55 / 2e-08 GATA GATA22, CGA1, GNL GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) AT5G56860 55 / 2e-08 GATA GATA21, GNC GATA, nitrate-inducible, carbon metabolism-involved, GATA TRANSCRIPTION FACTOR 21, GATA type zinc finger transcription factor family protein (.1) AT5G26930 46 / 3e-06 GATA GATA23 GATA transcription factor 23 (.1) AT3G50870 45 / 3e-05 GATA GATA18, HAN, MNP MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) AT4G36620 44 / 3e-05 GATA GATA19, HANL2 hanaba taranu like 2, GATA transcription factor 19 (.1) AT5G49300 43 / 4e-05 GATA GATA16 GATA transcription factor 16 (.1) AT2G18380 42 / 0.0001 GATA GATA20, HANL1 hanaba taranu like 1, GATA transcription factor 20 (.1) AT3G16870 42 / 0.0002 GATA GATA17 GATA transcription factor 17 (.1) AT4G16141 41 / 0.0003 GATA GATA type zinc finger transcription factor family protein (.1) AT1G08010 41 / 0.0005 GATA GATA11 GATA transcription factor 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006000 [exp] 256 / 3e-83 AT4G26150 79 / 7e-16 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Lus10016849 [exp] 44 / 3e-05 AT3G06740 154 / 6e-49 GATA transcription factor 15 (.1) Lus10037721 [exp] 44 / 4e-05 AT3G06740 153 / 2e-48 GATA transcription factor 15 (.1) Lus10029863 [exp] 43 / 0.0001 AT4G16141 90 / 1e-22 GATA type zinc finger transcription factor family protein (.1) Lus10041746 [exp] 43 / 0.0002 AT3G50870 93 / 8e-22 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Lus10028301 [exp] 42 / 0.0002 AT3G50870 135 / 4e-39 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Lus10020684 [exp] 41 / 0.0003 AT4G16141 94 / 9e-24 GATA type zinc finger transcription factor family protein (.1) Lus10010027 [exp] 39 / 0.0009 AT5G49300 87 / 8e-23 GATA transcription factor 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229200 [exp] 52 / 2e-07 AT4G26150 111 / 3e-28 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.018G053600 [exp] 52 / 2e-07 AT4G26150 75 / 4e-15 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.005G020500 [exp] 45 / 1e-05 AT3G06740 67 / 1e-14 GATA transcription factor 15 (.1) Potri.008G213900 [exp] 43 / 3e-05 AT3G06740 126 / 4e-38 GATA transcription factor 15 (.1) Potri.010G001300 [exp] 43 / 4e-05 AT3G06740 135 / 2e-41 GATA transcription factor 15 (.1) Potri.002G199800 [exp] 42 / 0.0001 AT5G49300 112 / 1e-32 GATA transcription factor 16 (.1) Potri.005G122700 [exp] 42 / 0.0002 AT3G50870 198 / 1e-62 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.007G024500 [exp] 42 / 0.0002 AT3G50870 202 / 5e-64 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.014G124400 [exp] 40 / 0.0005 AT5G49300 106 / 2e-30 GATA transcription factor 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10040556 pacid=23157655 polypeptide=Lus10040556 locus=Lus10040556.g ID=Lus10040556.BGIv1.0 annot-version=v1.0 ATGATGAATTCAAATTATCAATATTCCTCCCACCAATTCCCTCCTTTCTCCATAGACCTTAACCAAGATCATCAGCACTACCTAAACGCTCATTACTTCA CTACTGCTATTACAACAGCAACAACAACAACAAGTAGTTCACCATCTTCGTCTTCTTCTTCTCCTCTACCTAATTATCATATCTTCATCAACCCTCCTCC TCCTGCTACCCAGTACTCTGGCGAAGATACCGATCCCGGTGGACACTTAGACTACTCATCCTGGGGGCTTCCTCCTCCAGCAGCAGCAGCAGCAGCAGCT TCCTTCCACCAGTATCATCAACCTCCCCAGATCCTTCTCCAAAAGGGCGGCTCATCATGTATGTATGATCAGGAGATGGTGGAAGTAGTAGATTATAATC ATAACGGATCGCTAGACAAGATGGAGAAAGAAATGAGTTATGATGTAGTGTCGCCCAAGTTGAGGATCATGAATCAGAAGAAGAAGAAGCTGACGATCAA GACAAATGTTAAAAAACCCAATAACTTAAACGACGTCCAGTCGCCGTCAACTTTACAGCTCCAGCCTGCTGCTATGACTGACAACACCACCAATACTACT ACTATGACTACAACAACTAGTAGCAATTCTCCAACGGCGGGTAGTCCTACGGTTAGGGTTTGCTCTGATTGCAACACCACCAAGACTCCTCTCTGGCGTA GCGGACCCCAAGGCCCTAAGGATAAGATTGATATGATGCACTGTTGGGCGAGTGTGATGAAGGAGTGTGGTAGGAAATCATCGGTACTGGCAAATTGGGC CAGGAGGAAGAGGAGGAGAGTCACGAGATTGGATGTAGCATCTTAG
AA sequence Show only first row Show all	>Lus10040556 pacid=23157655 polypeptide=Lus10040556 locus=Lus10040556.g ID=Lus10040556.BGIv1.0 annot-version=v1.0 MMNSNYQYSSHQFPPFSIDLNQDHQHYLNAHYFTTAITTATTTTSSSPSSSSSSPLPNYHIFINPPPPATQYSGEDTDPGGHLDYSSWGLPPPAAAAAAA SFHQYHQPPQILLQKGGSSCMYDQEMVEVVDYNHNGSLDKMEKEMSYDVVSPKLRIMNQKKKKLTIKTNVKKPNNLNDVQSPSTLQLQPAAMTDNTTNTT TMTTTTSSNSPTAGSPTVRVCSDCNTTKTPLWRSGPQGPKDKIDMMHCWASVMKECGRKSSVLANWARRKRRRVTRLDVAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56860	GATA	GATA21, GNC	GATA, nitrate-inducible, carbo...		Lus10040556 [exp]	0	1
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	5.6	0.8330
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023012 [exp]	6.5	0.8129
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10006894 [exp]	8.9	0.8266
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	10.0	0.8268
AT4G10340		LHCB5	light harvesting complex of ph...		Lus10013778 [exp]	13.5	0.8284
AT3G18890		AtTic62	translocon at the inner envelo...		Lus10026321 [exp]	24.1	0.8282
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10022279 [exp]	27.5	0.7971
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028852 [exp]	28.3	0.7698
AT4G31950		CYP82C3	"cytochrome P450, family 82, s...		Lus10038202 [exp]	28.4	0.7837
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	29.0	0.8265

Compare expression of checked genes

Lus10040556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.