Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26140 979 / 0 BGAL12 beta-galactosidase 12 (.1.2) AT5G56870 959 / 0 BGAL4 beta-galactosidase 4 (.1) AT3G52840 946 / 0 BGAL2 beta-galactosidase 2 (.1) AT3G13750 935 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT1G45130 856 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G36360 840 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G28470 752 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT5G63810 688 / 0 BGAL10 beta-galactosidase 10 (.1) AT2G32810 664 / 0 BGAL9 beta-galactosidase 9, beta galactosidase 9 (.1.2) AT5G63800 605 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006009 [exp] 1297 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10028848 [exp] 1137 / 0 AT4G26140 1080 / 0.0 beta-galactosidase 12 (.1.2) Lus10008974 [exp] 1136 / 0 AT4G26140 1068 / 0.0 beta-galactosidase 12 (.1.2) Lus10000701 [exp] 934 / 0 AT3G13750 1481 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10037644 [exp] 930 / 0 AT3G13750 1432 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10015625 [exp] 914 / 0 AT3G13750 1417 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Lus10041798 [exp] 840 / 0 AT4G36360 1443 / 0.0 beta-galactosidase 3 (.1.2) Lus10024292 [exp] 840 / 0 AT1G45130 1128 / 0.0 beta-galactosidase 5 (.1) Lus10025980 [exp] 828 / 0 AT4G36360 1422 / 0.0 beta-galactosidase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G144500 [exp] 1001 / 0 AT3G13750 1260 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.003G038500 [exp] 972 / 0 AT3G13750 1484 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.001G200400 [exp] 957 / 0 AT3G13750 1471 / 0.0 beta-galactosidase 1, beta galactosidase 1 (.1) Potri.005G232600 [exp] 875 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.004G159800 [exp] 855 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.007G018100 [exp] 847 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 739 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G099800 [exp] 708 / 0 AT5G63810 1083 / 0.0 beta-galactosidase 10 (.1) Potri.011G044300 [exp] 680 / 0 AT2G28470 993 / 0.0 beta-galactosidase 8 (.1.2) Potri.001G025701 [exp] 642 / 0 AT5G20710 1123 / 0.0 beta-galactosidase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01301 [flax] [poplar] Glyco_hydro_35 Glycosyl hydrolases family 35
Representative CDS sequence Show only first row Show all	>Lus10040557 pacid=23157865 polypeptide=Lus10040557 locus=Lus10040557.g ID=Lus10040557.BGIv1.0 annot-version=v1.0 ATGTTGTTGAGGCAGCTGAGCCTTACTTTATTGTTACTACTGCTATGTGTTTCTACAGTAGTCAAAGCTTCTGTCACTTACGATCGTAAAGCCATAATCG TCAATGGACAGAGAAGGATTCTTCTCTCTGGTTCAATTCACTACCCAAGAAGCACCCCGGAGATGTGGCCTGGCCTTATACAGAAGGCCAAAGATGGAGG ATTGGACGTAATTCAGACATACGTTTTCTGGAATGGTCATGAACCTTCACCCGGAAATTATTATTTCGAGGACAGATACGACCTGGTGAAGTTCATAAAG CTGATACAACAAGCGGGTCTGTACGTTAACCTCCGGATTGGGCCTTACGTTTGTGCTGAATGGAATTTCGGGGGATTCCCTGTCTGGCTTAAGTATCAGA AAGGGATGTCTTTCAGAACTGACAATGGGCCCTTTAAGGCGGCAATGCAAAAGTTCACGACGAAGATCGTGAACATGATGAAGCAAGAGAAGCTTTTTGA ACCGCAGGGTGGGCCAATTATTCTTTCCCAGATTGAGAACGAATACGGGCCGGTGGAATATGAGATCGGAGCTCCGGGAAAAGCTTATACGCAATGGGCG GCGAAGATGGCAGTGGGGCTCAACACAGGAGTTCCATGGATTATGTGCAAGCAAGACGATGTTCCTGACCCTTTGATAGATACTTGCAATGCATTTTACT GCGAGAACTTCAAGCCAAAGAAATCATATAGGCCTAAAATGTGGACAGAAGTTTGGACAGGATGGTACACAGGATGGGGAAGTCCAGTGCCATACAGACC AGCAGAAGATTTGGCATTTGCAGTTGCTAGGTTCATTCAGAATGGTGGCTCCTTTGTCAATTATTACATGTATCATGGAGGCACAAACTTTGGTAGAACT GCCGGTGGTCCCTTTGTTGCCACCAGCTATGACTATGACGCTCCTCTTGATGAATACGGTTTAACAAATGACCCAAAGTACACGCACTTAAAAAATATGC ATAAAGCAATCAAGCAATGTGAATCCGCTTTGGTTTCTGCTGATGCCACTGTCAGGTCACTCGGAAAAAGTCAAGAGGTCAAATCAATCAACCCTAGTTT TAACTTCTGTTTCTTGTATGGATTTTGGCCTTTCCAAAGGTTAGGAAAGCTGGGAAGGGACAAGGGTTTCAAAATCGGGAATCAGATTTTTAAATGTTTG CAATTGCTAATTGCAATGCAGGTTTCAGCTCCGAGAGTGCATAAGAAGATGACTCCAGTGGGTGGGTTTGTGTGGAACTCATACATAGATGAAATTACTT CTGGTTTTGCAAGTGATACAACTACACTTGATGGAATGTTCGAACAACTCTACTTGACACAGGATTCTTCAGATTATCTATGGTACATGACAGATGTTAA GATAGGTAGTGATGAGGCATTCCTGAAGAATGGAGTAGACCCTGTTCTCACCGTCCTGTCAGCTGGACACTTTGTCAATGTTTTTGTCAATGGAAAACTC ATTGGAAGCGCCTACGGTGGCGTTGACAATCCTAAGTTAACCTTTAGCAAGAGTGTGAAGCTAAATGTTGGTGTTAACAAGATAGCATTGTTGAGCGCTT CAGTTGGTCTTGCGAATGTTGGCGTACACTATGAAAATTACAACGTTGGAGTACTTGGGCCGGTAACCCTGAAAGGATTGAATCAGGGGACAGTTGACAT GACAAAATGGAAATGGTCTTACAAGGTAGGAGTTGAAGGTGAGAAGTTGCAGCTGAATACCATCACTGGAAGTTCATCTGTTGACTGGGTCGATGGATCG ACGTTAGTCAAGAAACAACCATTGTCATGGTATAAGGCAACTTTCAATGCACCAAGAGGTAACGAGCCATTAGCTTTGGACATGATCAGCATGGGAAAAG GGCAGGTTTGGATCAATGGTCAGAGCATAGGCCGTTACTGGCCTGCGTATAAAGCACAAGGCAACTGCGGCAACTGCTATTACGGTGGATACTTCACTGA GAAGAAATGTCTCACCAATTGTGGACAGCCTACACAAAGATGGTACCACGTTCCACGATCATGGCTGAAACCAACTGGGAACTTGCTGGTAGTGTTTGAA GAATGGGGAGGTGATCCTACTGGGATTTCTATGGTGAAAAGAACTGCAGGTTGA
AA sequence Show only first row Show all	>Lus10040557 pacid=23157865 polypeptide=Lus10040557 locus=Lus10040557.g ID=Lus10040557.BGIv1.0 annot-version=v1.0 MLLRQLSLTLLLLLLCVSTVVKASVTYDRKAIIVNGQRRILLSGSIHYPRSTPEMWPGLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIK LIQQAGLYVNLRIGPYVCAEWNFGGFPVWLKYQKGMSFRTDNGPFKAAMQKFTTKIVNMMKQEKLFEPQGGPIILSQIENEYGPVEYEIGAPGKAYTQWA AKMAVGLNTGVPWIMCKQDDVPDPLIDTCNAFYCENFKPKKSYRPKMWTEVWTGWYTGWGSPVPYRPAEDLAFAVARFIQNGGSFVNYYMYHGGTNFGRT AGGPFVATSYDYDAPLDEYGLTNDPKYTHLKNMHKAIKQCESALVSADATVRSLGKSQEVKSINPSFNFCFLYGFWPFQRLGKLGRDKGFKIGNQIFKCL QLLIAMQVSAPRVHKKMTPVGGFVWNSYIDEITSGFASDTTTLDGMFEQLYLTQDSSDYLWYMTDVKIGSDEAFLKNGVDPVLTVLSAGHFVNVFVNGKL IGSAYGGVDNPKLTFSKSVKLNVGVNKIALLSASVGLANVGVHYENYNVGVLGPVTLKGLNQGTVDMTKWKWSYKVGVEGEKLQLNTITGSSSVDWVDGS TLVKKQPLSWYKATFNAPRGNEPLALDMISMGKGQVWINGQSIGRYWPAYKAQGNCGNCYYGGYFTEKKCLTNCGQPTQRWYHVPRSWLKPTGNLLVVFE EWGGDPTGISMVKRTAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10040557 [exp]	0	1
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	1.0	0.9791
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Lus10028235 [exp]	2.2	0.9378
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10038265 [exp]	2.4	0.9468
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	2.8	0.9624
AT3G15358			unknown protein		Lus10011176 [exp]	4.4	0.9028
					Lus10024788 [exp]	4.7	0.9014
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	5.3	0.9397
AT2G01818			PLATZ transcription factor fam...		Lus10028998 [exp]	7.5	0.8912
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	7.7	0.9377
AT1G55510		BCDH BETA1, BCD...	branched-chain alpha-keto acid...		Lus10013401 [exp]	8.4	0.9349

Compare expression of checked genes

Lus10040557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.