Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29720 171 / 6e-51 ATPAO5 polyamine oxidase 5 (.1) AT3G13682 51 / 1e-07 LDL2 LSD1-like2 (.1) AT4G16310 46 / 6e-06 LDL3 LSD1-like 3 (.1) AT1G62830 45 / 7e-06 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 45 / 9e-06 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006012 [exp] 308 / 1e-107 AT4G29720 302 / 2e-100 polyamine oxidase 5 (.1) Lus10038587 [exp] 47 / 4e-06 AT3G13682 971 / 0.0 LSD1-like2 (.1) Lus10037885 [exp] 46 / 7e-06 AT3G13682 969 / 0.0 LSD1-like2 (.1) Lus10024311 [exp] 45 / 2e-05 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10033928 [exp] 45 / 2e-05 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10015996 [exp] 42 / 0.0002 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10012283 [exp] 41 / 0.0002 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10028817 [exp] 40 / 0.0008 AT3G10390 808 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10017464 [exp] 40 / 0.0009 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G151300 [exp] 184 / 1e-55 AT4G29720 635 / 0.0 polyamine oxidase 5 (.1) Potri.008G035200 [exp] 49 / 5e-07 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.010G227200 [exp] 49 / 6e-07 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.011G127600 [exp] 46 / 5e-06 AT3G13682 959 / 0.0 LSD1-like2 (.1) Potri.005G235400 [exp] 46 / 6e-06 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.002G027100 [exp] 46 / 7e-06 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.002G013100 [exp] 42 / 0.0002 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10040559 pacid=23157703 polypeptide=Lus10040559 locus=Lus10040559.g ID=Lus10040559.BGIv1.0 annot-version=v1.0 ATGGCATTTCACAGGACCAACTCGGAGCACAGACTGAAGGAAATCCCCTGGTGGATAAGGAGGACAGCTTCGTTAACCCCAATTCACAAGAACTCAAATG TGTTGCTGTCATGGTTTACTGGGAAAGAAGCTCTTGAGCTGGAATCTCTAAGCGACGAGGAGATCATCAATGGTGTTTCAGCAACCATTTCCGGCTTCTT ACCCAACACCACCGACAAAAATACGGGAGTGAAATTGAGCAAGGTTTTAAGGAGTAAATGGGGTAATGACCCTCTATTCTTGGGGTCTTATAGTTATGTT GCAGTTGGTTCAAGTGGAGATGATTTGGATGCAATGGGTCAACCATTGCCGAATGTTTTAGAACGTGATGAGGAGGATGGAGGTTCTACCCCATTGCCAT CTATGCAAATTCTGTTTGCAGGGGAGGCAACACATAGAACCCATTACTCAACAACTCATGGAGCTTACTTCAGTGGGATTAGAGAAGCTAATAGGCTTCT TCAGCATTACCAATGGGCGAAGAAGGGTTTAGACGACTATTAA
AA sequence Show only first row Show all	>Lus10040559 pacid=23157703 polypeptide=Lus10040559 locus=Lus10040559.g ID=Lus10040559.BGIv1.0 annot-version=v1.0 MAFHRTNSEHRLKEIPWWIRRTASLTPIHKNSNVLLSWFTGKEALELESLSDEEIINGVSATISGFLPNTTDKNTGVKLSKVLRSKWGNDPLFLGSYSYV AVGSSGDDLDAMGQPLPNVLERDEEDGGSTPLPSMQILFAGEATHRTHYSTTHGAYFSGIREANRLLQHYQWAKKGLDDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040559 [exp]	0	1
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10040558 [exp]	1.4	0.9123
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	1.4	0.9114
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	2.4	0.8821
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	2.8	0.8723
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006011 [exp]	5.9	0.8666
AT1G62870			unknown protein		Lus10004325 [exp]	7.3	0.8659
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10008779 [exp]	7.5	0.8480
AT3G09040			Pentatricopeptide repeat (PPR)...		Lus10010169 [exp]	8.9	0.8280
AT1G42540		ATGLR3.3	glutamate receptor 3.3 (.1)		Lus10016031 [exp]	13.7	0.8285
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	13.9	0.8161

Compare expression of checked genes

Lus10040559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.