Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10250 196 / 5e-64 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT1G07400 121 / 5e-35 HSP20-like chaperones superfamily protein (.1) AT1G59860 119 / 3e-34 HSP20-like chaperones superfamily protein (.1) AT1G53540 118 / 7e-34 HSP20-like chaperones superfamily protein (.1) AT5G59720 110 / 7e-31 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT3G46230 107 / 9e-30 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT2G29500 107 / 2e-29 HSP20-like chaperones superfamily protein (.1) AT5G12020 84 / 1e-20 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 81 / 4e-19 AT-HSP17.6A heat shock protein 17.6A (.1) AT1G54050 76 / 2e-17 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000932 [exp] 291 / 2e-101 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 155 / 5e-48 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 155 / 6e-48 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 106 / 4e-29 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 105 / 8e-29 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 103 / 5e-28 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 103 / 6e-28 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 102 / 2e-27 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 100 / 8e-27 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089200 [exp] 185 / 9e-59 AT4G10250 225 / 1e-74 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 120 / 1e-34 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 120 / 1e-34 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 119 / 4e-34 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 119 / 5e-34 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 118 / 9e-34 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 116 / 4e-33 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 116 / 4e-33 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 112 / 2e-31 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 111 / 4e-31 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10040560 pacid=23157877 polypeptide=Lus10040560 locus=Lus10040560.g ID=Lus10040560.BGIv1.0 annot-version=v1.0 ATGGCATCATCATCATTATTTCAAGTTCAACGTCTTCTCTTCTTACCAATCATCTCGTCCTTACTTGCCTTGATCATCCTCAATAGTACTACAAGGTCAA CAGCATCTCTCCTCCCTTTCCTCGAACCCACACCTCCGGACCTCTGGAGGGACCCATTCCGGGTGCTTGAGCAGATACCATTGAGCCTCGAGAGGGACCT GGCCGACGTGGCAGCACCCCTTCTTGCCAGGGTGGACTGGAAGGAGACCCCGGAGGGACACGTAATCACTCTCGACGTGCCCGGTCTGAGTAAAGATGAC GTCAAGATAGAGGTGGAGGAGAACAGAGTTGTAAGAGTGAGTGGCGAGAGGAAGCGGCAGGAAGAAGGAAAGAGCGGGACGGGGGAGCACTGGCACAGGC TGGAACGTTCCTACGGGAAGTTCTGGAGGCAGTTTAGGATGCCTGAGAATGCTGATTTGGATTCCGTCAAGGCCAAGATGGACAGCGGGGTTTTGACACT AAGTTTCACCAAGTTGTCGCCTGATAAGGTTACAGGTCCGAGGAGTGTGAGTATTGATGCAGGTGGCGGGAGCATGGATCAGCAGCTGAAAGACGAGTCC AAGCACGAGCTGTGA
AA sequence Show only first row Show all	>Lus10040560 pacid=23157877 polypeptide=Lus10040560 locus=Lus10040560.g ID=Lus10040560.BGIv1.0 annot-version=v1.0 MASSSLFQVQRLLFLPIISSLLALIILNSTTRSTASLLPFLEPTPPDLWRDPFRVLEQIPLSLERDLADVAAPLLARVDWKETPEGHVITLDVPGLSKDD VKIEVEENRVVRVSGERKRQEEGKSGTGEHWHRLERSYGKFWRQFRMPENADLDSVKAKMDSGVLTLSFTKLSPDKVTGPRSVSIDAGGGSMDQQLKDES KHEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10040560 [exp]	0	1
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	2.8	0.8469
AT4G10265			Wound-responsive family protei...		Lus10039756 [exp]	4.0	0.7110
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032682 [exp]	6.2	0.7741
AT3G24850	B3		Domain of unknown function (DU...		Lus10038802 [exp]	6.3	0.7654
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019836 [exp]	11.8	0.6986
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10025252 [exp]	17.3	0.7771
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10018621 [exp]	19.3	0.7392
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	19.4	0.7573
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	21.4	0.7343
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	23.2	0.7349

Compare expression of checked genes

Lus10040560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.