Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33360 677 / 0 ATP-dependent Clp protease (.1) AT5G53350 599 / 0 CLPX CLP protease regulatory subunit X (.1) AT5G49840 502 / 1e-170 ATP-dependent Clp protease (.1) AT1G79560 49 / 1e-05 EMB36, EMB156, EMB1047, FTSH12 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) AT3G01610 45 / 0.0003 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT3G02450 44 / 0.0004 cell division protein ftsH, putative (.1) AT5G19990 43 / 0.0007 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 43 / 0.0007 RPT6A AAA-type ATPase family protein (.1) AT1G45000 42 / 0.0009 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000933 [exp] 1026 / 0 AT1G33360 711 / 0.0 ATP-dependent Clp protease (.1) Lus10036701 [exp] 566 / 0 AT5G53350 706 / 0.0 CLP protease regulatory subunit X (.1) Lus10037222 [exp] 527 / 0 AT5G53350 651 / 0.0 CLP protease regulatory subunit X (.1) Lus10010691 [exp] 479 / 5e-162 AT5G49840 635 / 0.0 ATP-dependent Clp protease (.1) Lus10031169 [exp] 49 / 2e-05 AT1G79560 1356 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10031745 [exp] 48 / 3e-05 AT1G79560 1357 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Lus10009233 [exp] 47 / 6e-05 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10038001 [exp] 47 / 6e-05 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10033055 [exp] 44 / 0.0004 AT5G19990 749 / 0.0 regulatory particle triple-A ATPase 6A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G089500 [exp] 790 / 0 AT1G33360 742 / 0.0 ATP-dependent Clp protease (.1) Potri.015G012900 [exp] 573 / 0 AT5G53350 675 / 0.0 CLP protease regulatory subunit X (.1) Potri.012G015600 [exp] 552 / 0 AT5G53350 709 / 0.0 CLP protease regulatory subunit X (.1) Potri.004G229400 [exp] 526 / 2e-180 AT5G49840 701 / 0.0 ATP-dependent Clp protease (.1) Potri.010G171300 [exp] 49 / 1e-05 AT1G79560 1563 / 0.0 EMBRYO DEFECTIVE 36, EMBRYO DEFECTIVE 156, EMBRYO DEFECTIVE 1047, FTSH protease 12 (.1) Potri.013G151600 [exp] 48 / 3e-05 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.004G106500 [exp] 45 / 0.0002 AT3G02450 657 / 0.0 cell division protein ftsH, putative (.1) Potri.008G144100 [exp] 43 / 0.0007 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.010G098300 [exp] 43 / 0.0008 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10040561 pacid=23157852 polypeptide=Lus10040561 locus=Lus10040561.g ID=Lus10040561.BGIv1.0 annot-version=v1.0 ATGACTGGAATTTGGAGATGGCAGAAGCTCAAGGACAGTGGCACCTCCCTCTTCCTCCGCTCACCGATCGTATTTCGCCTTCCTCCTCCTCTTCCTTCTT TTCCGGCGGCGCGCTTCCTCCGTGTCTCTCCAATCTCCACGCATTTCAACTTCATCGGTGGTGGCGGCGGTTATCGTCGCCGGGTGTCTCTCATCGAGAT TCAGGAGCGATATAAATGGGACCAGGGCGGAGGCGATAGCGGAACTGGAGGTGGTGGTAATTCCATTGATAACAACAGTATCCGCCAGATTAGGGCTGAA GCTAATTGTCCTCGTTGTTCTAAGCACATGGATCTTCTCTTCTCCAAAAATCAAGGCCGGAATCCTCACAATCATATTCATAATCAAATTCCCAATCTAT CCCCTGTTTCCGATCCCTCTTCTTCGAATCAGAATAGTAGCAGCACCAGCTCCAGCAGCAGTGCCTATGTTTTGCAGGCGGCCAATTATTGTCCCAGTTG TACAACTGCCTACTACTTCCGCCCTAACAACACTGCTCCACTTCAGGGTAGTTTTGTCGAGATTGGGAGAATCAGCAATAGTAGGCTGAGGAATAAGTAC AATTCAGCCAAACATTCTAACAACCGTGGTAACAGTAACGACGATCAGGATTCATCTTCCGGTGATTTCGTTATCAGCAGCACCATTAATAAGAGGCTCA AGTCTTCATTCTGGCAAACTCTCAGGTCTTATGCTGCTGACCCCCCTGAAAATGGGCCACCTCCTCCTCCTCCTCCACCACCTGCGCCTAATGGCCTGGC TGTTCATACTCCTCCTGGTCCCCCATTTGCACCTGGTGTTAATGTCGTCAGGGCTGCCTCCCCAGATGGTAATGTGGCAGAAGGTGATAAGGGTGGCAGG TGGGGTGGGGCTAATCTAGGCAAGGATTTACCAACTCCTAAAGAGATCTGCAAGGGTCTTGACAAGTTTGTTATTGGCCAAGACAGGGCCAAAAAGGTGC TTTCCGTTGCTGTGTACAATCACTATAAGCGGATCTACCATTCTTCCCAGAAAGGGTTAGGAGCAGAATCTTCGGGTATGGAGCCAATAGATGATGGCGA TAATGTAGAGTTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACTGGCTCAGGGAAAACGTTGCTTGCAAAGACACTTGCACGATTTGTCAATGTGCCT TTTGTCATTGCAGACGCTACAACATTGACTCAGGCAAGCGCAGCTGAGTTCAATGTGCAAGCAGCTCAACAAGGGATAGTCTACATTGATGAAGTTGATA AGATAACTAAGAAGGCTGAGAGCATGAACATTAGCAGAGACGTGTCTGGCGAAGGTGTACAACAGGCATTATTGAAAATGCTCGAAGGAACAATTGTTAC AGTTCCTGAAAAGGGAGCAAGGAAGCAACCCAGAGGTGATAACATACAGATAGATACAAAAAATATTCTCTTTATTTGTGGTGGAGCATTTATTGATCTG GAAAAGACTGTTTCAGAGAGACGGCAAGACTCATCGATTGGATTTGGAGCACCTGTCCGAGCTAACATGAGAGCTGCTGGAGTAACCAATTCTGCTGTGA CTTCATCCTTGCTTGAAGCAGTGGAGAGTGGTGATCTCATTGCCTATGGTCTCATACCAGAATTCATTGGGCGCTTCCCTATATTAGTTAGTTTGATAGC TCTAACAGAAGATCAACTTATGCGGGTGCTCACAGAACCAAGAAATGCTCTTGGTAAGCAGTATAAGAAGTTATTTGCCATGAACACGGTGAAGCTGCAT TTCACAGAGAAAGCACTTGGACTAATTGCCAGAAAAGCAATGGTTAAGAATACTGGTGCTAGGGGTTTGAGAGCCATACTAGAAAGTATTCTTATGGAAT CCATGTACGAGATTCCGGATGATGAGCAAGGAAGTAACCGGGTAGTAGCAGTTGTAGTTGATGAAGAGTCTGTGGGATCAGAAAACACAAGTGGTTGTGG AGGGAAGATTCTTCGTGGAGATGGTGCATTGGAACGGTGGCTTGTACAGTACAAGCTAAACGATTCACCGGTATAG
AA sequence Show only first row Show all	>Lus10040561 pacid=23157852 polypeptide=Lus10040561 locus=Lus10040561.g ID=Lus10040561.BGIv1.0 annot-version=v1.0 MTGIWRWQKLKDSGTSLFLRSPIVFRLPPPLPSFPAARFLRVSPISTHFNFIGGGGGYRRRVSLIEIQERYKWDQGGGDSGTGGGGNSIDNNSIRQIRAE ANCPRCSKHMDLLFSKNQGRNPHNHIHNQIPNLSPVSDPSSSNQNSSSTSSSSSAYVLQAANYCPSCTTAYYFRPNNTAPLQGSFVEIGRISNSRLRNKY NSAKHSNNRGNSNDDQDSSSGDFVISSTINKRLKSSFWQTLRSYAADPPENGPPPPPPPPPAPNGLAVHTPPGPPFAPGVNVVRAASPDGNVAEGDKGGR WGGANLGKDLPTPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIYHSSQKGLGAESSGMEPIDDGDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVP FVIADATTLTQASAAEFNVQAAQQGIVYIDEVDKITKKAESMNISRDVSGEGVQQALLKMLEGTIVTVPEKGARKQPRGDNIQIDTKNILFICGGAFIDL EKTVSERRQDSSIGFGAPVRANMRAAGVTNSAVTSSLLEAVESGDLIAYGLIPEFIGRFPILVSLIALTEDQLMRVLTEPRNALGKQYKKLFAMNTVKLH FTEKALGLIARKAMVKNTGARGLRAILESILMESMYEIPDDEQGSNRVVAVVVDEESVGSENTSGCGGKILRGDGALERWLVQYKLNDSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33360			ATP-dependent Clp protease (.1...		Lus10040561 [exp]	0	1
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	1.0	0.8610
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	5.7	0.8187
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10001011 [exp]	7.5	0.7943
AT3G03940			Protein kinase family protein ...		Lus10024261 [exp]	8.7	0.7867
AT5G66050			Wound-responsive family protei...		Lus10041852 [exp]	9.2	0.7704
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	10.4	0.7837
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	10.4	0.8334
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	11.0	0.7598
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	21.0	0.7462
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Lus10016580 [exp]	21.2	0.7600

Compare expression of checked genes

Lus10040561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.