Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10260 521 / 0 pfkB-like carbohydrate kinase family protein (.1) AT1G06030 430 / 3e-152 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 427 / 6e-151 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 425 / 2e-150 pfkB-like carbohydrate kinase family protein (.1) AT2G31390 421 / 1e-148 STH pfkB-like carbohydrate kinase family protein (.1) AT1G66430 413 / 7e-145 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 411 / 1e-144 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 184 / 3e-54 FLN1 fructokinase-like 1 (.1) AT1G50390 157 / 8e-48 pfkB-like carbohydrate kinase family protein (.1) AT1G69200 148 / 4e-40 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028089 [exp] 526 / 0 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 430 / 3e-152 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 430 / 4e-152 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009526 [exp] 425 / 5e-150 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 421 / 2e-148 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 416 / 3e-146 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 407 / 2e-142 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 407 / 3e-142 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 326 / 3e-112 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G063600 [exp] 542 / 0 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 426 / 2e-150 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.007G129700 [exp] 423 / 2e-149 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 421 / 5e-148 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 420 / 6e-148 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 416 / 2e-146 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 410 / 1e-143 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 176 / 4e-50 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 166 / 1e-47 AT3G54090 630 / 0.0 fructokinase-like 1 (.1) Potri.014G074125 [exp] 71 / 3e-15 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10040562 pacid=23157675 polypeptide=Lus10040562 locus=Lus10040562.g ID=Lus10040562.BGIv1.0 annot-version=v1.0 ATGGCAATGATAGTGGCATTCGGTGAGATGCTAATCGATTTTGTCCCAGACGTGGCCGGTGTTTCACTTGCGGAATCTAAAGGATTTCTCAAAGCCCCCG GTGGGGCTCCTGCAAATGTCGCTTGCGCCATCACCAAACTCGGGGGAAAATCAGCCTTCCTCGGCAAGTTTGGAGATGACGAGTTCGGACACATGTTGGT AGACATCCTGAAGAAGAACAACGTGAACACTGAAGGAGTATGCTTTGACAAAGAAGCTAGGACGGCACTGGCATTCGTAACGCTAAAGCACGATGGGGAA AGGGAGTTTATGTTCTACCGGAATCCAAGCGCCGACATGCTGCTCAAGGAGTCCGAGCTAAACATTAACTTAATAAAGCAGGCTAAGATCTTTCACTATG GATCCATAAGCTTGATCTCCGAGCCTTGTCGATCTACCCACATGGCTGCCATGAAGGCTGCTAAGGCCGCCGGGGTATTGCTATCTTATGACCCAAATGT GAGGCTTCCTCTTTGGCCTTCCGCAGATGCCGCTAGGGATGGGATCAAAAGCATTTGGAAGGAGGCCGATTTCATCAAGGTGAGCGATGATGAGGTGGAG TTTTTGACGAAAGGGAGTGCAGACAAGGAAGAGGTTGTGTTGTCCCTATGGCATGATATGTTGAAGCTTCTTATTGTCACAGATGGCCCGAAAGGCTGCA GATACTTCACCAAGAATTTCAAAGGGAAGGTGAGTGGTTGTAGCGTGAAGGCAGTGGATACAACAGGAGCAGGGGATGCATTTGTGGGTTCATTCCTGGT TTCTATTGCTAAGGACCCTTCTATTTTTGAGAATGAAGAGAAACTAAAGGAAGCATTAGCTTTTGCAAATGCATGTGGGGCAATTTGCACTACTCAGAAA GGAGCCATCCCTGCACTTCCCACCACTAATGACGCTCTTGCTCTACTTAAATCCAAATAG
AA sequence Show only first row Show all	>Lus10040562 pacid=23157675 polypeptide=Lus10040562 locus=Lus10040562.g ID=Lus10040562.BGIv1.0 annot-version=v1.0 MAMIVAFGEMLIDFVPDVAGVSLAESKGFLKAPGGAPANVACAITKLGGKSAFLGKFGDDEFGHMLVDILKKNNVNTEGVCFDKEARTALAFVTLKHDGE REFMFYRNPSADMLLKESELNINLIKQAKIFHYGSISLISEPCRSTHMAAMKAAKAAGVLLSYDPNVRLPLWPSADAARDGIKSIWKEADFIKVSDDEVE FLTKGSADKEEVVLSLWHDMLKLLIVTDGPKGCRYFTKNFKGKVSGCSVKAVDTTGAGDAFVGSFLVSIAKDPSIFENEEKLKEALAFANACGAICTTQK GAIPALPTTNDALALLKSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10260			pfkB-like carbohydrate kinase ...		Lus10040562 [exp]	0	1
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10016191 [exp]	1.7	0.7956
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10002062 [exp]	2.0	0.7924
AT5G14870		ATCNGC18	cyclic nucleotide-gated channe...		Lus10039415 [exp]	6.7	0.7298
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	9.8	0.7220
					Lus10039269 [exp]	11.8	0.6107
					Lus10019456 [exp]	12.6	0.6962
					Lus10035428 [exp]	13.0	0.6860
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	15.9	0.6927
AT4G19130			Replication factor-A protein 1...		Lus10034056 [exp]	16.4	0.6669
AT5G01750			Protein of unknown function (D...		Lus10007360 [exp]	20.0	0.6268

Compare expression of checked genes

Lus10040562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.