Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24710 1244 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028092 [exp] 932 / 0 AT5G24710 931 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10028093 [exp] 424 / 1e-134 AT5G24710 758 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081800 [exp] 1311 / 0 AT5G24710 1890 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10040563 pacid=23157566 polypeptide=Lus10040563 locus=Lus10040563.g ID=Lus10040563.BGIv1.0 annot-version=v1.0 ATGTTACGGCTTAAAGCATTCAGGCCGAGCAACGACAAGATCTTAAAAATCCAATTGCATCCTACGCATCCCTGGCTTGTAACCGCCGATGCATCCGATC GCGTCTCCGTTTGGAATTGGGAGCATCGCCAGATTATTTATGAGCTGAAAGCGGGTGGTGTTGACGAGAGGCGGTTGGTCGGAGCCAAGTTGGAGAAGCT TGCCGAGGGTGAATCCGAACCTAGAGGGAAACCTACTGAAGCCATGAGAGGAGGCAGTGTTAAGCAGGTCAACTTTTATGATGATGATGTACGATTTTGG CAACTATGGAGCAACCGCGCGGCAGCTGCGGAGGCTCCCTCTGCTGTCAACAATGTTACTTCTGCCTTCACGTCTCCTGCTCCGTCAACCAAAGGGAGGC ATTTTCTTGTGATCTGTTGTGAAAACAAAGCCATCTTTTTGGACTTGGTGACTATGCGTGGTCGTGATGTACCCAAGCAAGAACTTGACAATAGATCACT TCTCTGTTACACCGGTGCTGGGCTTTCTGTAGGAAATTCTGTCATATTTTTTGTCCACTGTGCTCTTAGTTATTGTCTTTCATCATGCAGTATGGAGTTT CTCTGTAGATCTACTGCTGGTGATGGTCCTCTCATTGCATTTGGTGGATCAGATGGTGTCATTAGAGTTCTTTCGATGATCTCATGGAAGCTTGTACGCC GATACACCGGGGGTCATAAAGGGGCCATAGCTTGCTTAATGACCTTCATTGCTTCCTCTGGTGAGGCACTACTTGTTTCGGGTGGTAGTGATGGTCTACT TGTACTTTGGAGCGCAGACCATGTTCATGATTCAAGAGAGCTTGTACCCAAATTAAGCTTAAAGGCACATGATGGTGGGGTTGTAGCTGTTGAGCTTTCT AGAGTACTTGGAGGTGCCCCACAACTTATAACAATTGGTGCAGATAAGACATTAGCTATATGGGACACAATGTCTTTTAAGGAGTTGCGGCGAATCAAAC CAGTTCCAAAAATGTCTTGTAACAGTGTTGCATCTTGGTGCCATCCTCGAGCTCCAAACTTGGACATTTTAACTTGTGTCAAGGATTCTCATATATGGGC CATCGAACATCCTACTTATTCAGCCCTCACTAGGCCATTATGTGAGCTGTCTTCCCTCATCCCACCCCAATATATTGTCCCCAGCAAGAAACTCAGGGTT TATTGCATGGTTGCACATCCTCTGCAGCCTCACCTTGTTGCTACTGGAACCACTGTTGGTGTTATTATCAGTGAGTTCGATCCTAAATCTCTTCCAGCTG TGGCTCCCCTGCCCACACCACCAGGAAATCGTGAGCATTCCGCTGTCTATGTCATTGAAAGGGAATTGAAATTGTTGAACTTTCAACTATCCAACACGGC AAATCCATCTCTTGGAAGTAATGGCTCTTTATCTGAAGCTGGAAAGTACAAGGGCGATGCAGCTGAACAGTTGCATGTCAAACAGATCAAAAAGCACATT AGTACTCCAGTTCCACACGATTCATATTCAGTAGTTTCAGTCAGCAGTTCGGGAAAGTATCTTGCGGTTGTATGGCCAGACATTCCCTACTTCTCTATAT ACAAAGTCAGCGACTGGTCCATTGTAGATTCAGGAAGTGCAAGGCTTCTAGCTTGGGATACATGCCGTGATAGATTCGCTATATTGGAAGCTGCTGCCCC ACCTAGGATTCCTATAATTCCGAAAGGAGGTTCATCCAGGAAGGCAAAGGAAGCAGCTGCGGCTGCTGCCCAAGCTGCCGCTGCAGCTGCTACTGCTGCT TCTGCTGCTACTGTGCAAGTTCGTATTTTGCTGGATGATGGTACATCAAATATATTAATGAGGTCGATAGGTGGTCGCTCTGAGCCAGTTATTGGTTTGC ACGGAGGAGCACTATTAGGTGTGGCCTATCGAACATCACGGAGGATCAGCCCTGGTGCAGCAATGGCTATTTCAACTATCCAACCCATGTCTGGATTTGG AAGTTCCTTCACAACAATTGATGACGCCAATCATCGGTCTGCTGCAGAGGCAGCCCCTCAAAATTTCCAGTTATACAGTTGGGAAAGTTTTGAACCCGTG GGTGGTCTACTTCCTCAACCAGAATGGACTGCATGGGACCAAACTGTGGAGTATTGTGCTTTTGCTTATCAACAATATATCGTAATATCATCTTTGCGCC CCCAATATAGATATCTTGGAGATGTTGCGATCCCCTATGCTACTGGAGGTGTTTGGCATCGGAGACAGCTTTTTGTAGCAACGCCAACTACTATCGAATG TGTATTTGTGGATGCTGGAGTTGCAGCAATAGATATAGAAACTAAAAGGATGAAGGATGAAATGAAACTTAGAGAGGCACAGGAAAGGGCAGTTGCTGAG CATGGGGACCTAGCACTAATTGCAGTAGAAGGTCCTCAAGTTTCAGCACAAGAAAGAATAGCATTACGGCCACCAATGCTGCAGAACACAGTTGATAGCA CCGTCACTTCTGACGACGATAGCAACTCCAACAATTCTGGAGTCATGTCGATCCCACCAAGTTCATCCGGTAATTCCTATCCTGGATGA
AA sequence Show only first row Show all	>Lus10040563 pacid=23157566 polypeptide=Lus10040563 locus=Lus10040563.g ID=Lus10040563.BGIv1.0 annot-version=v1.0 MLRLKAFRPSNDKILKIQLHPTHPWLVTADASDRVSVWNWEHRQIIYELKAGGVDERRLVGAKLEKLAEGESEPRGKPTEAMRGGSVKQVNFYDDDVRFW QLWSNRAAAAEAPSAVNNVTSAFTSPAPSTKGRHFLVICCENKAIFLDLVTMRGRDVPKQELDNRSLLCYTGAGLSVGNSVIFFVHCALSYCLSSCSMEF LCRSTAGDGPLIAFGGSDGVIRVLSMISWKLVRRYTGGHKGAIACLMTFIASSGEALLVSGGSDGLLVLWSADHVHDSRELVPKLSLKAHDGGVVAVELS RVLGGAPQLITIGADKTLAIWDTMSFKELRRIKPVPKMSCNSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLIPPQYIVPSKKLRV YCMVAHPLQPHLVATGTTVGVIISEFDPKSLPAVAPLPTPPGNREHSAVYVIERELKLLNFQLSNTANPSLGSNGSLSEAGKYKGDAAEQLHVKQIKKHI STPVPHDSYSVVSVSSSGKYLAVVWPDIPYFSIYKVSDWSIVDSGSARLLAWDTCRDRFAILEAAAPPRIPIIPKGGSSRKAKEAAAAAAQAAAAAATAA SAATVQVRILLDDGTSNILMRSIGGRSEPVIGLHGGALLGVAYRTSRRISPGAAMAISTIQPMSGFGSSFTTIDDANHRSAAEAAPQNFQLYSWESFEPV GGLLPQPEWTAWDQTVEYCAFAYQQYIVISSLRPQYRYLGDVAIPYATGGVWHRRQLFVATPTTIECVFVDAGVAAIDIETKRMKDEMKLREAQERAVAE HGDLALIAVEGPQVSAQERIALRPPMLQNTVDSTVTSDDDSNSNNSGVMSIPPSSSGNSYPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24710			Transducin/WD40 repeat-like su...		Lus10040563 [exp]	0	1
AT1G35220			unknown protein		Lus10036487 [exp]	2.0	0.9681
AT3G50590			Transducin/WD40 repeat-like su...		Lus10002967 [exp]	2.8	0.9649
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	4.0	0.9636
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	4.2	0.9646
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	4.5	0.9628
AT1G35220			unknown protein		Lus10010355 [exp]	4.6	0.9593
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10033864 [exp]	4.7	0.9372
AT1G31730			Adaptin family protein (.1)		Lus10035684 [exp]	7.1	0.9569
AT2G25800			Protein of unknown function (D...		Lus10008430 [exp]	7.2	0.9483
AT1G19835			Plant protein of unknown funct...		Lus10034509 [exp]	7.7	0.9272

Compare expression of checked genes

Lus10040563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.