Plant FIBer expression Database

Lus10040564 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24710 644 / 0 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028093
[exp]
900 / 0 AT5G24710 758 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Lus10028092
[exp]
155 / 8e-40 AT5G24710 931 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G081800
[exp]
660 / 0 AT5G24710 1890 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10040564 pacid=23157786 polypeptide=Lus10040564 locus=Lus10040564.g ID=Lus10040564.BGIv1.0 annot-version=v1.0
ATGTACCACCCGTGGTCTAAATGTATGTCATTTCTTTTCCAGGTGGTTCGTCTAGCTTCATTCCAGCATGCTCCTTCAGTGCCACCTTTCTTATCGTTAC
CGAAACAAACTAGAGTGGATGGTGATGACTCGGGAATGCCAAAAGAGATGGAAGACAAAAAATATACTGAGGTAGCTGTTGGTGGCGGAGGAGTGTCTGT
GGCTGTTACACGTTTTCCTACAGAACAGAAGCGACCAGTGGGGCCACTTGTTGTCATTGGTGTGAGAGATGGGGTTCTCTGGCTTATTGATAGGTATATG
TGTGCGCATGCCTTATCTCTCAGTCATCCTGGTATTCGTTGCCGTTGTCTGGCTGCCTACGGAGATGCTGTTAGTGCAGTGAAATGGGCAAGCAGGCTTG
GTAGAGAACATCATGATGATCTGGCGGAGTTTTTATTGGGAATGGGTTATGCTACTGAAGCACTTCATTTGCCTGGAATATCCAAAAGGTTGGAGTTTGA
TCTGGCCATGCAAAGTAGTGACTTGAAAAGAGCTCTTCAGTGCCTTGTTACTATGAGTAACAGCAGGGACATTGGGCAAGATGGTACTGGCCTTGAATTG
AGCGACATCCTTAACTTGACTGTTAAGAAGGAAGATGTTGTGGATGCTGTTCAGGGAGTTGTGAAATTTGCCAAGGAATTTCTGGAGCTGATTGATGCTG
CAGATGCTACTGCGCAAGCTGACATTGCTCGTGAAGCACTCAAGAGGTTAGCAGCTGCAGGCTCTGTGAAAGGAGCCTTACAGAGCCATGAATTAAGAGG
ACTTGCTTTGCGCCTTGCTAATCATGGAGAGTTAACACGACTAAGTGGCCTGGTAAACAACTTGATTTCAATTGGACTGGGGCGTGAAGCAGCATTTGCA
GCAGCAGTGCTTGGTGATAATGCCCTCATGGAGAAAGCATGGCAGGACACTGGAATGCTTGCTGAAGCTGTCCTTCATGCCCATGCTCATGGTCGACCAA
CATTGAAGAACATGGTCCAGTCTTGGAACAAAATGTTGCAGAAGGAAGTTGAACACGCTCCCTCAACAAAAACTGATGCAGCAGCTGCTTTTTTGGCATC
CCTCGAGGAACCAAAGCTCACAAGTCTTGCAGATGCTGGGAAGAAGCCACCCATTGAAATTCTTCCTCCTGGAATGCCATCTCTAACTGGTCTAATTACT
ACTCAGAAAAAACCAACCCCGGGTACTTTGAATGCGCAGAAGCAACCACCGAGTCAACCATTACAGTTGGAGGCACCTCCAGCTACACAAGAACAAGGTG
CTGCACCAGCAGTAGCAGTAGCAACACAGGGTCCTGCACCCGCAACTACTACGCCAGAACAAGACTCAGTGCCAGCATTAGCAACAGGCGAACCCACTGC
GGAAGGCCAAGCTACTATATCATCATCTGCTAGTAATCCGGATTTAACTGCATCATCGGATAAAGCCACTCTTCCTTCCTCTAGAAGTAATCCTGAGCTA
GCTACATCTGGCGGAGGTGTCCCTGCAAGTTCAGAAGAACACAAGGATGCAACAATAACACTGTCCCAAGAAGAATTACCAGTTCCAAATAATGAGGAAG
TAAGTGCTAACCCTCGCCCTATATTGACCACAAGTGAGTTTCTTGCCTAA
AA sequence
>Lus10040564 pacid=23157786 polypeptide=Lus10040564 locus=Lus10040564.g ID=Lus10040564.BGIv1.0 annot-version=v1.0
MYHPWSKCMSFLFQVVRLASFQHAPSVPPFLSLPKQTRVDGDDSGMPKEMEDKKYTEVAVGGGGVSVAVTRFPTEQKRPVGPLVVIGVRDGVLWLIDRYM
CAHALSLSHPGIRCRCLAAYGDAVSAVKWASRLGREHHDDLAEFLLGMGYATEALHLPGISKRLEFDLAMQSSDLKRALQCLVTMSNSRDIGQDGTGLEL
SDILNLTVKKEDVVDAVQGVVKFAKEFLELIDAADATAQADIAREALKRLAAAGSVKGALQSHELRGLALRLANHGELTRLSGLVNNLISIGLGREAAFA
AAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTLKNMVQSWNKMLQKEVEHAPSTKTDAAAAFLASLEEPKLTSLADAGKKPPIEILPPGMPSLTGLIT
TQKKPTPGTLNAQKQPPSQPLQLEAPPATQEQGAAPAVAVATQGPAPATTTPEQDSVPALATGEPTAEGQATISSSASNPDLTASSDKATLPSSRSNPEL
ATSGGGVPASSEEHKDATITLSQEELPVPNNEEVSANPRPILTTSEFLA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G24710 Transducin/WD40 repeat-like su... Lus10040564
[exp]
0 1
AT1G14830 DRP1C, ADL5, AD... DYNAMIN RELATED PROTEIN 1C, AR... Lus10029001
[exp]
2.6 0.9079
AT2G16405 Transducin/WD40 repeat-like su... Lus10028800
[exp]
3.2 0.8813
AT3G43220 Phosphoinositide phosphatase f... Lus10039913
[exp]
5.0 0.8888
AT1G10950 AtTMN1 transmembrane nine 1 (.1) Lus10001368
[exp]
5.3 0.9025
AT1G59610 DRP2B, CF1, ADL... Dynamin related protein 2B, dy... Lus10007887
[exp]
7.1 0.8965
AT2G01600 ENTH/ANTH/VHS superfamily prot... Lus10034610
[exp]
8.2 0.8726
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Lus10009247
[exp]
9.4 0.8665
AT1G61850 phospholipases;galactolipases ... Lus10007661
[exp]
10.2 0.8735
AT4G32640 Sec23/Sec24 protein transport ... Lus10004122
[exp]
10.8 0.8940
AT1G30450 HAP5, ATCCC1, C... HAPLESS 5, cation-chloride co-... Lus10036156
[exp]
11.7 0.8835

Lus10040564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.