Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28400 340 / 6e-118 Protein phosphatase 2C family protein (.1) AT2G20630 337 / 7e-117 PIA1 PP2C induced by AVRRPM1 (.1.2) AT1G22280 322 / 5e-111 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT3G15260 315 / 6e-108 Protein phosphatase 2C family protein (.1.2) AT1G34750 312 / 8e-107 Protein phosphatase 2C family protein (.1) AT1G78200 300 / 6e-102 Protein phosphatase 2C family protein (.1.2) AT2G34740 276 / 4e-92 Protein phosphatase 2C family protein (.1.2) AT4G31750 207 / 3e-65 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 198 / 2e-60 Protein phosphatase 2C family protein (.1) AT5G10740 192 / 4e-59 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028094 [exp] 543 / 0 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 481 / 4e-173 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 331 / 3e-114 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 329 / 2e-113 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 322 / 5e-111 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10033453 [exp] 291 / 1e-98 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 273 / 1e-91 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2) Lus10005405 [exp] 253 / 5e-84 AT3G15260 370 / 3e-130 Protein phosphatase 2C family protein (.1.2) Lus10009210 [exp] 235 / 1e-75 AT3G15260 300 / 4e-101 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081400 [exp] 441 / 2e-157 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.018G150800 [exp] 433 / 2e-154 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 331 / 2e-114 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 331 / 3e-114 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 325 / 4e-112 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.017G013300 [exp] 320 / 5e-110 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.011G116700 [exp] 317 / 5e-109 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.006G267600 [exp] 202 / 1e-63 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 198 / 5e-62 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 189 / 2e-58 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10040565 pacid=23157743 polypeptide=Lus10040565 locus=Lus10040565.g ID=Lus10040565.BGIv1.0 annot-version=v1.0 ATGACTAGACCCATAGCTACAGCTTCTTCCAGAGATGCCCTGTCTTTCATCGACAGGATCACGTGCGGGCTTTGCCTGCAATCGTCAGATACAGGGAAAG GGAAGAGCAAATCCTCCAACTCTAGAAGGATGTCGCACGGATTTCACTTAGTCAAAGGGAAATCAGGGCACGATATGGAGGACTACCACTTTGCTGAGTA TCGCAAATCCAGGAATCATGAGCTTGGTTTGTTCGCAATCTTCGACGGACATCTAGGCCACAGTGTTGCCAGTTATCTCAAAGACAACCTCATCAACAAT ATCCTCAACGAGCCCATTTTCTGGAAAGATCCTGCTGGGGCAATCAAGAATGCTTACTGCTCAACTGATAATCTCATACTGAACAATTCTCTGCAACTAG GCCCTGGTGGCTCAACTGCAGTCACTGCCATTGTTATTGATGGTAAAGACTTGTGGGTTGCCAACATTGGAGATTCTAGAGCTGTTGTCTGCGAGTTAGG CGCTGCCAATCAACTCACAGTCGACCATGAGCCTCATACCGAACGAAAGAGGATTGAGAATCAAGGCGGCTTCGTCACTACTCTTCCTGGAGATGTACCA AGGGTTAATGGTCAACTTGCAGTTGCTCGAGCTTTCGGCGATCAGAGTCTCAAGGCACATTTAACTTCAGAACCTGATGTAAGGCATGTGCCCATAGACT CCACAATGGAATTTGTTATATTAGCCAGTGATGGCTTGTGGAAGGTGATGAAGAACCAAGAGGCAGTGGATTTGGTGAAAGGTAGGAAAGATCCTCAGGC AGCAGCAAAGAGATTGACGACGGAGGCATTGGCTAGAAACAGCAAAGACGATATATCATGCATTGTCATCCGCTTTGGTTGA
AA sequence Show only first row Show all	>Lus10040565 pacid=23157743 polypeptide=Lus10040565 locus=Lus10040565.g ID=Lus10040565.BGIv1.0 annot-version=v1.0 MTRPIATASSRDALSFIDRITCGLCLQSSDTGKGKSKSSNSRRMSHGFHLVKGKSGHDMEDYHFAEYRKSRNHELGLFAIFDGHLGHSVASYLKDNLINN ILNEPIFWKDPAGAIKNAYCSTDNLILNNSLQLGPGGSTAVTAIVIDGKDLWVANIGDSRAVVCELGAANQLTVDHEPHTERKRIENQGGFVTTLPGDVP RVNGQLAVARAFGDQSLKAHLTSEPDVRHVPIDSTMEFVILASDGLWKVMKNQEAVDLVKGRKDPQAAAKRLTTEALARNSKDDISCIVIRFG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28400			Protein phosphatase 2C family ...		Lus10040565 [exp]	0	1
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	1.7	0.9607
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	2.0	0.9579
					Lus10008302 [exp]	4.2	0.9340
					Lus10034740 [exp]	4.6	0.9349
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	4.9	0.9462
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10035840 [exp]	5.5	0.9537
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10015587 [exp]	6.5	0.9356
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	6.7	0.9409
AT4G32030			unknown protein		Lus10001935 [exp]	7.3	0.9171
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10009818 [exp]	7.5	0.8993

Compare expression of checked genes

Lus10040565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.