Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62440 377 / 9e-121 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 373 / 5e-120 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G24480 328 / 1e-105 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 322 / 2e-99 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 319 / 3e-99 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G33970 297 / 2e-91 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 297 / 2e-91 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 294 / 4e-89 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 280 / 9e-88 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 292 / 1e-87 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028097 [exp] 411 / 4e-137 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10017727 [exp] 305 / 3e-94 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 279 / 2e-88 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 278 / 6e-87 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 264 / 4e-82 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 267 / 1e-80 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 265 / 2e-79 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10038631 [exp] 254 / 1e-78 AT4G13340 355 / 8e-120 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 261 / 8e-78 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G151000 [exp] 411 / 2e-137 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G081200 [exp] 414 / 7e-135 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G075900 [exp] 323 / 7e-102 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 314 / 2e-99 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 319 / 1e-98 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 307 / 1e-96 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 314 / 1e-94 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 291 / 6e-91 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 276 / 8e-87 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 274 / 1e-86 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10040566 pacid=23157609 polypeptide=Lus10040566 locus=Lus10040566.g ID=Lus10040566.BGIv1.0 annot-version=v1.0 ATGTCTTCCACCTCCTCCTTTCTCCTCCTCCTCCTCCTCATCTCCGCCACCTTCCTCCTCCTCCCCCCTACATCCACCGCCGCCGTTACTGTCCCAACAT CCCTCACTTTCCAAAACCCTCGCCTCCGCCAAGCCTACATTGCCCTCCAAACATGGAAACAGGACGCCATCTACTCTGACCCTTTCAACTTCACCGCCAA CTGGAATGGCTCCAATGTCTGCTCCTACTCCGGCGTCTTCTGCGCTCCTTCCCCTTCCAACCCCACCCTCCGCGTTGTCGCCGGCATCGACCTCAACCAC GCCGACATCGCCGGCTACCTCCCTCCCGAGCTCGGCCTCCTCTCCGATCTCGCCCTCTTCCACATCAACTCCAACCGCTTCTGCGGCGTCGTTCCCAAAT CATTCCGCAAACTCAAACTCCTCCACGAGCTTGACCTCAGCAACAACCGATTCGTCGGCGAGTTTCCTACCGTCGTCATCTCACTACCTTCTCTCAAATT CTTAGATCTGAGATTCAACGACTTCGAAGGCTCTGTTCCTTCCTCGCTGTTCGATAAGCCGCTGGATGCTCTCTTCTTGAACGACAATCGATTCCGATTC GGGATCCCTAAAAATCTAGGCAACTCCCCTATTGTTCCTTTGTTGTGTGCTGTTGGAAAGATGAAGAGGGGGGGGCAGCTGAATGTGGCTCATACCCGCT TCACTGGAGTTATTCCAGCCAGCGTTTGCCAGCTCCCCAATCTTCAAAACTTTACTAACTCTTTTAACTACTTCACCGGCGAGGCTCCGAGCTGTGCTGC GGTTGCAAGAAGTGGAGTTGTGGTTAATGGCACCGAGAATTGTATTGCTGGAAAGGCTAATCAGAGATCTGGTAAGGAGTGTTCCTCTCAAGCTGCTCGT CCTGTGGATTGTCGCAAACTTCAATGTGGCGGAGGCGGAGGCGGAGGTGGCCGTAGAAAGCCTCCGGTTAATAATGTTCCCTCCACTCCCAAGCCTGCGC CGACCACAAGGCCTAAAGTCTCACCACCTGCGCCACCGACTTCTAAGTCCTCTCCTTCGTCTAGATCTCGTTCTCCCCCGCCTCCGACTAGATCTTTCGA TTCCCCTCCTTCGCCACCATCGCCTTCTTCCAGGATCTCCCCAGTGACTCATATTTCACCACCGCCTCCACCTTCCCCTGTCCAACAGCCTTCACCGGCT CCTTCTCGCCAGCCAACACCACCACCTACGGAGAAAGTTTCACCGGGGACCCTTTACTCCCCACCGCCGCCACCACCCGTTTACTCCCCACCGCCGCCGC CACCTGTTTACTCCCCACCACCGCCAGTTTACTCATCTCCGTCGCCGCCACCACCACCGGCTGAGATTTACCCACCTCCTTACTACCCACAGTCATCTCC GCCACCTCCTCCGCCACCGGCTGAATCTCACCCACCACCTTACTACCAGCAGTCATCTCCGCCACCACCTCCACCAGTAGAATACCATCAATCGCCTCCT CCGCCAGCAAGCTACCCGACATACTCACCTCCTCCGGTTCCAGCTTCGCATTCCCCTCCACCCCCACAAGCCGGATGTGAAGAACCGCCACCTGCATCAA CAAGGTCACCCCCGTCTCCACCGCCGACGCCAACTGTGCAATCTCCTCCTCCACCGGTGCATCATCACCGAAGTCCTCCACCGCCGCCTCCGGCAAGGCA TTACACATACTCATCTCCTCCACCTCCGGTTCATTCATCACCGCCNNNNNGGCTCATTCACCACCGCCGCCATCACCTCCACCCCCGAGTCCGGATAGCG TACCGTTGCCACCAGTGGTAG
AA sequence Show only first row Show all	>Lus10040566 pacid=23157609 polypeptide=Lus10040566 locus=Lus10040566.g ID=Lus10040566.BGIv1.0 annot-version=v1.0 MSSTSSFLLLLLLISATFLLLPPTSTAAVTVPTSLTFQNPRLRQAYIALQTWKQDAIYSDPFNFTANWNGSNVCSYSGVFCAPSPSNPTLRVVAGIDLNH ADIAGYLPPELGLLSDLALFHINSNRFCGVVPKSFRKLKLLHELDLSNNRFVGEFPTVVISLPSLKFLDLRFNDFEGSVPSSLFDKPLDALFLNDNRFRF GIPKNLGNSPIVPLLCAVGKMKRGGQLNVAHTRFTGVIPASVCQLPNLQNFTNSFNYFTGEAPSCAAVARSGVVVNGTENCIAGKANQRSGKECSSQAAR PVDCRKLQCGGGGGGGGRRKPPVNNVPSTPKPAPTTRPKVSPPAPPTSKSSPSSRSRSPPPPTRSFDSPPSPPSPSSRISPVTHISPPPPPSPVQQPSPA PSRQPTPPPTEKVSPGTLYSPPPPPPVYSPPPPPPVYSPPPPVYSSPSPPPPPAEIYPPPYYPQSSPPPPPPPAESHPPPYYQQSSPPPPPPVEYHQSPP PPASYPTYSPPPVPASHSPPPPQAGCEEPPPASTRSPPSPPPTPTVQSPPPPVHHHRSPPPPPPARHYTYSSPPPPVHSSPXXXLIHHRRHHLHPRVRIA YRCHQW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12040		LRX1	leucine-rich repeat/extensin 1...		Lus10040566 [exp]	0	1
AT1G19900			glyoxal oxidase-related protei...		Lus10012387 [exp]	2.4	0.8630
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Lus10028097 [exp]	4.5	0.8301
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008936 [exp]	5.2	0.8526
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	5.5	0.8559
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021718 [exp]	5.7	0.7964
AT3G57620			glyoxal oxidase-related protei...		Lus10012386 [exp]	6.7	0.7697
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	8.9	0.7632
					Lus10037463 [exp]	9.9	0.8232
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	12.2	0.8331
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	12.2	0.7950

Compare expression of checked genes

Lus10040566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.