Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58130 202 / 1e-55 ROS3 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040584 [exp] 1199 / 0 AT5G58130 213 / 1e-59 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028101 [exp] 782 / 0 AT5G58130 94 / 6e-20 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G151300 [exp] 223 / 4e-64 AT5G58130 184 / 1e-49 REPRESSOR OF SILENCING 3, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10040568 pacid=23157787 polypeptide=Lus10040568 locus=Lus10040568.g ID=Lus10040568.BGIv1.0 annot-version=v1.0 ATGGCGGAGACTGAAGCGGAAATCCATGGCAGAGAAGAAAAAGAAAGAGAAGAAGAAGAAACACCAACGGTGGTGAGGATATTCGTCGGCGGTCTGGGGG AGAGCGTGACTGACGATGACCTCCGTAATATTTTCTCGTCGTCGTCGAGGGGATTAGGAAAGGTCGAAACTATTGAAATCATTCGAACCAAAGGCCGGAG TTTCGCATATATGAACTTCTTCCCCTTGTCCCACAACTCCCTTTCCAGGCTCTTCTCTGCGTACAACGGGTGTGTTTGGAAGGGAGGCAAGCTCCGTCTG GAGAAGGCCAAAGATGATTATCTTTCTCGCCTGAAAAAGGAATGGGATGAAGATGCTCAGCTTGCTTCTCTATCTTCTGAGAAAGCTGCTGACCAAAAGT TGGAGCTTCCTTCATTACCAACTAAGGATGACCTCAGAGATCAGAAGATGGTGATGTTCTTCCCAAGATTAGGGAAGCAAGAAGTTGAATCCTTGGTCTT TATGCAGCTGAAAACACTCCCACTTATTGGAACTGGGAAGCATAGATACAGTTTCAGGCGTGTTGATGTTCCTCCTCTTCCTAAACACTTCTGTGACTGT GAGGAGCATTCCCATTATGTTGCTGTGAAGAAACGAAATCCTGATCCAGAGTATGGACACGATGGGTTGAATGAGCAAGAAATTAACTTGATGAACTCGG TCATGAGTCGGCTGCTCCAGAGAGAGAGTGGTGGGAAGCCTGCCGTTGGTGGTGTTGATGTTAAGATGGCTAAAGAGGAACACAAGAAGAAAGAGCCAGC AGTGGAGGAACATCATCCGGTTGATAGCCATGAAGCCCTGCAAGTTGATGATGATAGTGAATCAGATGAAGATAGCATCGTACTGAACATTGTGAGCAGG AAGCGGAAGTTTTCCTCCTCGACTAATCAGGAAGCCAAAGATTCTACATCACTTATAAAGGAGATGAAATCATTGCTCAATGGAGAAAACTATGTGAATG AATCCTCTCAATCTGCTCATCAAAATAGTGAAAGATCTAAGAGTCAATTGTCTCTGGGAACTCCCATTGTTGAAACGGAGAAAGGCATCAGAGGATCAAA TCCAAGTGTTGCAGAAAAGAAAAGGTCCTCGTGGAGAGAACTTGTTGATAATGGCAGTAGTAGCACATTCAATATATCTGAAGTACTGCCAGGATTAGGT TCCAACAAGAAGAAAGTCAGAAAGTCAGACAATATTGCCAAATCTGATCAAGTTGAGAATAGTGAATTCCAAGTAGATGGTAGCAATAACCAGTTTACTA TCTCTGGAGTACTGACAGGTGCAGCTCCCAGCATCATGGATCAATCCAACTCAGATGATATTGTGCTTACCAGTTCTGACAAGGAGACATCATCAGGAGA CGAAGAGAGTGAATCAGAATTAAGCAATACAGAAGTTACTGGCAATTGTAAACCCCGTGCATCCGGCATTTCTGAAGCATTGACAAATATAGACATCAGC AGTCATAAGGAGGAAGCCAAATCTGATGACGATGAGAAACTCAGTGATGATGACAATAATGAATTAAGTGAAGAAGAAATGTCGGAGGATGTCGAAAATG CTGGAGATGTCAAAAAGGCGTCCACTTCAGATAAGACGGCAGGCAGGGGTTCAGCATGGCGTCACAAGTCCTCATGGACGGAGTTGGTTAGTGGGAATAA CTGCAGTTTATTCAGCATCTCTCAGATCTTGCCCGGTGGGGATCCAGAGAAGCAAGAACCAGTAGTAGGTGAAGCTGTCAAAGTTGTTAGTTCCACAAGC AGTCAAGTTGATGATGGTAAAAGTAGTGAACCTATCCAACATTTGGTGGTCAACCCGGAAGAGAGAAATGTAGAAAGCTGTGCTGAAGTTGGTCAGATTG CAGAAAAGAATGAAGAATGTGAGGAAAAGGTGGGTTTAGTAAGGAAGCAACTGGTTGGGGAAACTTGCTCATTTATGAGAAGTGCTGCATCCTTAAAAGA GTGGGCAAAGGCTAAAGAAGCTCGCAGCAGATCACGTAAAAAGAGGAAGCAGTAA
AA sequence Show only first row Show all	>Lus10040568 pacid=23157787 polypeptide=Lus10040568 locus=Lus10040568.g ID=Lus10040568.BGIv1.0 annot-version=v1.0 MAETEAEIHGREEKEREEEETPTVVRIFVGGLGESVTDDDLRNIFSSSSRGLGKVETIEIIRTKGRSFAYMNFFPLSHNSLSRLFSAYNGCVWKGGKLRL EKAKDDYLSRLKKEWDEDAQLASLSSEKAADQKLELPSLPTKDDLRDQKMVMFFPRLGKQEVESLVFMQLKTLPLIGTGKHRYSFRRVDVPPLPKHFCDC EEHSHYVAVKKRNPDPEYGHDGLNEQEINLMNSVMSRLLQRESGGKPAVGGVDVKMAKEEHKKKEPAVEEHHPVDSHEALQVDDDSESDEDSIVLNIVSR KRKFSSSTNQEAKDSTSLIKEMKSLLNGENYVNESSQSAHQNSERSKSQLSLGTPIVETEKGIRGSNPSVAEKKRSSWRELVDNGSSSTFNISEVLPGLG SNKKKVRKSDNIAKSDQVENSEFQVDGSNNQFTISGVLTGAAPSIMDQSNSDDIVLTSSDKETSSGDEESESELSNTEVTGNCKPRASGISEALTNIDIS SHKEEAKSDDDEKLSDDDNNELSEEEMSEDVENAGDVKKASTSDKTAGRGSAWRHKSSWTELVSGNNCSLFSISQILPGGDPEKQEPVVGEAVKVVSSTS SQVDDGKSSEPIQHLVVNPEERNVESCAEVGQIAEKNEECEEKVGLVRKQLVGETCSFMRSAASLKEWAKAKEARSRSRKKRKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040568 [exp]	0	1
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Lus10040584 [exp]	1.0	0.9736
AT5G60370			unknown protein		Lus10023343 [exp]	2.4	0.9256
AT5G27640		ATTIF3B1, ATEIF...	EUKARYOTIC TRANSLATION INITIAT...		Lus10016562 [exp]	2.8	0.8923
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	3.0	0.8984
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10033095 [exp]	4.6	0.8717
AT2G32000			DNA topoisomerase, type IA, co...		Lus10021692 [exp]	9.4	0.8410
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10014047 [exp]	17.7	0.8801
AT1G67040			unknown protein		Lus10017607 [exp]	17.9	0.8858
AT4G17140			pleckstrin homology (PH) domai...		Lus10006816 [exp]	21.1	0.8087
AT1G77270			unknown protein		Lus10029729 [exp]	21.9	0.8716

Compare expression of checked genes

Lus10040568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.