Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26590 342 / 3e-118 RPN13 regulatory particle non-ATPase 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021598 [exp] 479 / 2e-171 AT2G26590 306 / 2e-103 regulatory particle non-ATPase 13 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078800 [exp] 399 / 2e-140 AT2G26590 386 / 2e-135 regulatory particle non-ATPase 13 (.1.2.3) Potri.003G027520 [exp] 62 / 9e-13 AT2G26590 61 / 1e-12 regulatory particle non-ATPase 13 (.1.2.3) Potri.003G027722 [exp] 44 / 6e-06 AT2G26590 92 / 4e-24 regulatory particle non-ATPase 13 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF04683 [flax] [poplar] Proteasom_Rpn13 Proteasome complex subunit Rpn13 ubiquitin receptor
Representative CDS sequence Show only first row Show all	>Lus10040571 pacid=23157666 polypeptide=Lus10040571 locus=Lus10040571.g ID=Lus10040571.BGIv1.0 annot-version=v1.0 ATGGATGGTATAACTTCATCTGTGCTCTCATTAGTCGTTTCTGGTCTTAAAGTTTCAAAGGTCTGCTGGCAGGACATGATGCTGGAATTCCGGGCTGGTA AAATGCACCTGGAGGACAAAAGGGTTGTCCCTGATCCTCGAAAAGGGCTGGTTTGCATAGCTAGGGATCAGATCATTTTCCCCGAAGAGGCCATATTTGA GAAGGTCAATCAAGCAGCAGGCAGGGTCTACATTCTGAAGTTCAATACAGATGACAGGAAATTTTTCTTTTGGATGCAGGAACCTAATGCAGAAGGAGAT GAGGAGCTATGTACCTCTGTTAACTATCAGATCAATAGACCATTAGAGTTTCTAGATGATGAACCTGATACTTCTGCTCTTCAAACTTCTGAAGACATGG TTGAAGATGAAATTTCATCACGAGCTGGAAACTTGATCGCTTCAAACATAGGTTCAGATGCAATGAATGATGTGACCTCTTCATCCGGAGCCGTGAAATT GGAAGATTTACAACGAATATTGAGCAATATTGAGCCTGGAGAGAGTTCTGGAGACCCAGATGGAGGCTTTGGACTAGGAGATATCTTTAAGCCTGATCTA ATAATGCCATTGATTGCTACACTACCGTTGGAAGAAAGATTAGCATCTTTCCTGCCTGAGGGTCCATGGACTCCAGAGGATGTTCTGGAATTGTTCCAAA GCCCGCCTTTCCGTCAACAAGTAGATTCTTTCACATATGTGTTGAAGACTGGACAGATTGATTTGTCTCAGTTTGGTGTTGATCCCAGTAAATACAGATT CACTGTATCGTCATTTCTGGAGGCTCTTGAAGAATCAGTAGCGAAGAAAGCAGAGGAAAACAAAGACTTAAGATCTGGGTCTCAGAATGACCCCATGGAC GAGACCCATTGA
AA sequence Show only first row Show all	>Lus10040571 pacid=23157666 polypeptide=Lus10040571 locus=Lus10040571.g ID=Lus10040571.BGIv1.0 annot-version=v1.0 MDGITSSVLSLVVSGLKVSKVCWQDMMLEFRAGKMHLEDKRVVPDPRKGLVCIARDQIIFPEEAIFEKVNQAAGRVYILKFNTDDRKFFFWMQEPNAEGD EELCTSVNYQINRPLEFLDDEPDTSALQTSEDMVEDEISSRAGNLIASNIGSDAMNDVTSSSGAVKLEDLQRILSNIEPGESSGDPDGGFGLGDIFKPDL IMPLIATLPLEERLASFLPEGPWTPEDVLELFQSPPFRQQVDSFTYVLKTGQIDLSQFGVDPSKYRFTVSSFLEALEESVAKKAEENKDLRSGSQNDPMD ETH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10040571 [exp]	0	1
					Lus10005904 [exp]	2.0	0.8874
AT1G80150			Tetratricopeptide repeat (TPR)...		Lus10019119 [exp]	3.2	0.8989
AT1G72050	C2H2ZnF	TFIIIA	transcription factor IIIA (.1....		Lus10037673 [exp]	4.6	0.8693
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	5.2	0.8877
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	5.3	0.8902
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037503 [exp]	6.7	0.8621
AT1G73350			unknown protein		Lus10042294 [exp]	8.7	0.8761
AT5G50840			unknown protein		Lus10040383 [exp]	9.8	0.8714
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Lus10003966 [exp]	9.8	0.8367
AT3G57000			nucleolar essential protein-re...		Lus10032053 [exp]	11.4	0.8613

Compare expression of checked genes

Lus10040571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.