Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10572 229 / 1e-72 APEM9 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021597 [exp] 563 / 0 AT3G10572 186 / 1e-55 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078700 [exp] 359 / 2e-123 AT3G10572 251 / 4e-81 ABERRANT PEROXISOME MORPHOLOGY 9, 3-phosphoinositide-dependent protein kinase-1, putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040572 pacid=23157741 polypeptide=Lus10040572 locus=Lus10040572.g ID=Lus10040572.BGIv1.0 annot-version=v1.0 ATGGACACAGCCGACTGGTTTTCCGCGATTTGGGAAGAAATTGATCGATCAGAGAGCTACCTTATTTGCTCCAAGTACGAGGAGGCTGCATCAATAGCCT CAGCGGTTTTGAAAAGAACACGCTCTGAAAGCACTGGGCAGTTTGAACAAAAGGATGAGCTTTTCCAAGTTAAAGAATCTGCGGGTATGGTTCTAGTTCA GTCATTGACCGAACTCGGAAGGGCATCGGATATTTTGAGTGAGCTGAAGGAGCTATTTCGTTACTCTGTTTCAATCCCTGCTGAGGTTCTTCTCACTGGG GTCTGTTTTCAAATATCTGCGGGGTCATTGATTGGCTTAAAAGAGTTTCTTGAAGACTTCCTTAGCAAGTGGATATTTATCGATGGAAGCTTTTATGTTC TTGGTGGAGCAGAGTCGACTATAAAGGTCCATGATGAAGGTGATTGGAGGAATAGATTGGACGTTGAAACATTTTTGGCAATTGTGGAGGTCTATGCTGT TACATTACTCGGAAAACATTTAAAAGAGTTCAACGTTGCAACTTCTTGGCTTGAGAAAGCTGCCTTACCCGAGCAGAATCGACAGGTGCTATTGAGAAGA TTGCAATCAATGTGTTCTGTAAAAACCTCCAATGGCGTCCATGGTTCTTCAGTTTCGGCAGAAAATAGTTGGGATCTTCATGGTTACTCATCAAAACCGG TAAATGATTCAGAAGGATCCTCGAAAGCTGTGAAAGCGAACTGCATGCCTGATGGGGAAAGTGCACGGATTGTGGAAATATCCAGGCATAAAATTCATCC TGTATGGTGGTTTCGTTGTATAAATGTGAAGCTTGGGAACATGCGAGTGGCTGTAACAAATGGGAAGATAGTTCTTAGTTGTGTTGTGGTTTTCCTGTGT TACGTCATTGAGAAGAAGCAAGCTGCTTTGACTCGGACTGTGAAGAAGCAGGTTGGGTGGATAAAGAAGTCGATGATAGAGTTATGGGAGCTTGCGTTTT CGTACCAGGTGAATCCCTTGGCAGCTGTACAGCCTATCACTGCAGCAACACGGCCAGGACGTTGA
AA sequence Show only first row Show all	>Lus10040572 pacid=23157741 polypeptide=Lus10040572 locus=Lus10040572.g ID=Lus10040572.BGIv1.0 annot-version=v1.0 MDTADWFSAIWEEIDRSESYLICSKYEEAASIASAVLKRTRSESTGQFEQKDELFQVKESAGMVLVQSLTELGRASDILSELKELFRYSVSIPAEVLLTG VCFQISAGSLIGLKEFLEDFLSKWIFIDGSFYVLGGAESTIKVHDEGDWRNRLDVETFLAIVEVYAVTLLGKHLKEFNVATSWLEKAALPEQNRQVLLRR LQSMCSVKTSNGVHGSSVSAENSWDLHGYSSKPVNDSEGSSKAVKANCMPDGESARIVEISRHKIHPVWWFRCINVKLGNMRVAVTNGKIVLSCVVVFLC YVIEKKQAALTRTVKKQVGWIKKSMIELWELAFSYQVNPLAAVQPITAATRPGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10040572 [exp]	0	1
AT1G72175			RING/U-box protein with domain...		Lus10020349 [exp]	5.1	0.9086
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10041980 [exp]	6.6	0.9056
AT5G61540			N-terminal nucleophile aminohy...		Lus10009560 [exp]	8.0	0.9002
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	18.0	0.8832
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	18.4	0.8851
AT5G14700			NAD(P)-binding Rossmann-fold s...		Lus10022239 [exp]	20.7	0.8627
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	22.1	0.9016
AT5G36930			Disease resistance protein (TI...		Lus10007829 [exp]	23.2	0.8607
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	28.2	0.8953
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10029146 [exp]	28.5	0.8947

Compare expression of checked genes

Lus10040572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.