Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24370 752 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 715 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 711 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT5G35380 697 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 689 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G07020 688 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 665 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G12000 657 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 575 / 0 protein kinase family protein (.1) AT1G17540 470 / 2e-155 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021596 [exp] 1214 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 926 / 0 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 793 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 733 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 731 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 685 / 0 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 677 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10042205 [exp] 655 / 0 AT1G16760 691 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009896 [exp] 579 / 0 AT2G24370 632 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078500 [exp] 799 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 778 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 695 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.018G061600 [exp] 673 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G001700 [exp] 652 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 648 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.006G225300 [exp] 646 / 0 AT5G12000 749 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 527 / 5e-176 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G170901 [exp] 467 / 9e-156 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 365 / 4e-114 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10040573 pacid=23157832 polypeptide=Lus10040573 locus=Lus10040573.g ID=Lus10040573.BGIv1.0 annot-version=v1.0 ATGTCGAAGAAGGTATCAGACAAAGAGTACCAACAAGTGGTTGTGGCAGTTGACAAAGATAAAGGAAGTCAAAACGCTCTGAAATGGGCGACTGAGCATC TCGTAAGCAAAGGCCATTCCATTACTCTCGTTCACATCAAACAATGTTCTTCTTCCTCCTCCGTTGCTTCAGTAGAAGATGATACCTTCAGAAACACTGT TATTGATAAACCAGCTAGAGAGTTGTTGTTACCCTTCCGCTGCTTCTGCACCCGCAAAGATCTAAAATGCAGCGAAGTTGTAGTAGAGGATTATGATATA GCCAAAGCAATCGTTGAGTATGTGAATGCGAATTCGGTGGATATTTTGGTTCGTGGATGTTTTGGTCTTAGGTTCCCCATCCAGAGGTGGCCTCGTCAGT TTAGGGTGACAGATGTTCCCAGCAATGTGACTAAATTGGTACCAGATTTCTGCACTGTATATGTAATTGGGAAAGGGAAGATCTCATCTGTAAAATCTGC AACTGCCCCTCTTCCTACTCCACCTAAACCTGCTCCTCCGTCAATGGCGACTCAATCATTATCTTCTCCGCTTCCTAATCTCTCAAATCCCCCCGAACCT GTTTCCAGGCTATACCAGAGAGCTGAAAAATCATCTTACTCGCCTCGCAGCAACCATGAAAGTGATTTCATCAGATCACCTTTCACAAGAGGAAGAGCTT CAATTGCCAAACTAGCGGAATCCCCCATGTCCGATTCAGACATCTCATTTGTCAGCAGTGGAAGGCCAAGCATCGACTACCAATTTTCATCCTTAAACGA TAGTGATGCTGGAAATACTCCCCGACTTTCGACTGGCTCCGATTTCGATGTTAGAAGCACTGGATCCTCCTCCTATTCAGGAAACAGCAAGTCCATGGAT CTTGGTTCTTTCCAGAATTTGTCCACCAGCTCCCAAGAAAGTGGCAGACTTTCTTCCTATTATGCTCCAAATCTGGAAGACATGGAAGCTGAGATGAGGA AGTTAAGACAAGAGCTGAGACAAACAATGGAAATGTATAGTTCAGCATGCAAAGAAGCATTGACAGCAAAACAACAAGCGAGGGAGCTTCACAGGTGGAG AATGGAGGAAGAGCAAAGGTTAGAGGAAGCAAAAATGTCAGAAGTAGCTGCATTGGCTCTGGTGGAGAAGGAGAAAGCCAAATGTAAAGCTGCTCTTGAG GCAGCGGAAGCAGCTGAGAAGATAGCCTATCTTGAAGCTCAGAAGAGAAGAGCTGCAGAGATGAGAGCCATGCAAGATGCAGAAGAGGCAAATAAGTCAT TATCCCATACAAACGATATCCGGTACAGGAGATATGATATTGAAGAGATTGAGATGGCAACCAAAGAGTTTGCAAACAATTTAAAGATTGGAGAAGGTGG GTATGGACCAGTGTACAAAGCGTATCTAGATCATACTCCAGTTGCAATCAAAGTCCTACGCCCGGATGCAGCTCAAGGGAGGTCACAATTTCAACAAGAG GTAGAAGTCTTGTCATGCATTCGACATCCTAACATGGTCCTCCTTCTCGGAGCCTGTCCGGAATATGGATGCTTAGTTTACGAATACATGGCCAACGGAA GCCTTGAAGACCGATTGTTAAGAAGAGGAAACACCCCACCTCTGTCATGGCAAGCAAGGTTTCGAATTTCTGCTGAAATAGCCACCAGCCTCTTGTTCCT CCACCAGACTAAGCCAGAACCACTTGTCCACCGCGATCTCAAGCCTGGGAACATATTGTTAGATAGGAACTTCGTTAGCAAGATCAGTGACGTTGGGCTA GCAAGGCTTGTCCCTCCATCAGTTGCAGACTCGGTCACCCAATATAGGATGACATCAACTGCAGGAACGTTCTGTTACATTGATCCGGAGTATCAACAGA CAGGAATGCTCGGGGTGAAGTCGGATATATACTCCTTGGGTATAATGTTACTTCAGATCATAACTGCCAAGCCACCAATGGGTCTAACTCATCATGTCCA AAAATCAATTGACAAAGGAACATTCGCAGATATGCTTGATCCTAGTGTTCCTGACTGGCCTGTTGAGGAGGCCTTAACTTATGCCAATCTGGCTCTTCAA TGTGCCGAATTGAGAAAGAAAGATAGACCGGATCTCGGGAAGGTGGTATTACCAGAGCTAAATAGGCTGAGAGGACTTGCAGAGGAAAATACATCATTTG GGGGACACAGCTATGGAGGGAGTACTACAGGGAGCTCTTCAAGCAGCACAAGCCAAGATGTGCTCAGTGATCTTCAGTCTTCTGGCTATGATAGCTCCAG AAGCAGATCGAGTAACTCTTCATATGGTGGAAAAAGATGA
AA sequence Show only first row Show all	>Lus10040573 pacid=23157832 polypeptide=Lus10040573 locus=Lus10040573.g ID=Lus10040573.BGIv1.0 annot-version=v1.0 MSKKVSDKEYQQVVVAVDKDKGSQNALKWATEHLVSKGHSITLVHIKQCSSSSSVASVEDDTFRNTVIDKPARELLLPFRCFCTRKDLKCSEVVVEDYDI AKAIVEYVNANSVDILVRGCFGLRFPIQRWPRQFRVTDVPSNVTKLVPDFCTVYVIGKGKISSVKSATAPLPTPPKPAPPSMATQSLSSPLPNLSNPPEP VSRLYQRAEKSSYSPRSNHESDFIRSPFTRGRASIAKLAESPMSDSDISFVSSGRPSIDYQFSSLNDSDAGNTPRLSTGSDFDVRSTGSSSYSGNSKSMD LGSFQNLSTSSQESGRLSSYYAPNLEDMEAEMRKLRQELRQTMEMYSSACKEALTAKQQARELHRWRMEEEQRLEEAKMSEVAALALVEKEKAKCKAALE AAEAAEKIAYLEAQKRRAAEMRAMQDAEEANKSLSHTNDIRYRRYDIEEIEMATKEFANNLKIGEGGYGPVYKAYLDHTPVAIKVLRPDAAQGRSQFQQE VEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLEDRLLRRGNTPPLSWQARFRISAEIATSLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGL ARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMLLQIITAKPPMGLTHHVQKSIDKGTFADMLDPSVPDWPVEEALTYANLALQ CAELRKKDRPDLGKVVLPELNRLRGLAEENTSFGGHSYGGSTTGSSSSSTSQDVLSDLQSSGYDSSRSRSSNSSYGGKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24370			Protein kinase protein with ad...		Lus10040573 [exp]	0	1
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	2.0	0.9571
AT1G71740			unknown protein		Lus10029742 [exp]	2.8	0.9534
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	3.6	0.9581
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	3.9	0.9335
AT4G27870			Vacuolar iron transporter (VIT...		Lus10011838 [exp]	4.4	0.9297
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	4.6	0.9551
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10020835 [exp]	5.3	0.9236
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	9.2	0.9524
					Lus10002465 [exp]	10.2	0.9499
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	11.0	0.9407

Compare expression of checked genes

Lus10040573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.