Gene [FLAX] | FIBexDB

Lus10040574 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10023090 [exp]	76 / 3e-18	AT4G23800	195 / 1e-59	3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2)
Lus10033951 [exp]	78 / 4e-18	AT4G11080	214 / 5e-65	3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Lus10032379 [exp]	77 / 9e-18	AT4G11080	481 / 1e-167	3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Lus10003904 [exp]	57 / 1e-10	AT4G11080	506 / 2e-177	3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Lus10001909 [exp]	54 / 8e-10	AT4G11080	496 / 2e-173	3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.001G093700 [exp]	43 / 8e-06	AT4G11080	325 / 2e-106	3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Potri.003G138000 [exp]	42 / 2e-05	AT4G11080	302 / 1e-97	3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)

PFAM info

Representative CDS sequence

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>Lus10040574 pacid=23157715 polypeptide=Lus10040574 locus=Lus10040574.g ID=Lus10040574.BGIv1.0 annot-version=v1.0

ATGGAAGAGATGCAGAAAATGCTTCAGCAGAGGAAGCTGGAGAAAGAGAAGACGGAGGAGATGTTGAAGGAGAAGAATGAGATGCTGAAGGCAAGGGAGG

ACGAGCTCGAGAACAAGGGGAAAGATCAGGACAAGCTGCAGTCGGAGCTCAAGGAGTTGAATCCTACACTCATGTTCAGAGACAACGAGCCTCACGACAA

GAGTAAGAATAAGAAGAAGAAAAAGAAGGACGATACTGAAATGAAAAGGCCATCAACACCTTACATCCTCTGGAGCAAAGATTAG

AA sequence

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>Lus10040574 pacid=23157715 polypeptide=Lus10040574 locus=Lus10040574.g ID=Lus10040574.BGIv1.0 annot-version=v1.0

MEEMQKMLQQRKLEKEKTEEMLKEKNEMLKAREDELENKGKDQDKLQSELKELNPTLMFRDNEPHDKSKNKKKKKKDDTEMKRPSTPYILWSKD

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23800		3xHMG-box2, AT4...	3xHigh Mobility Group-box2, HM...		Lus10040574 [exp]	0	1

Lus10040574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.