Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31040 459 / 1e-158 CemA-like proton extrusion protein-related (.1) ATCG00530 65 / 1e-11 ATCG00530.1, YCF10 CemA-like proton extrusion protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021616 [exp] 684 / 0 AT4G31040 494 / 3e-174 CemA-like proton extrusion protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G150000 [exp] 487 / 2e-169 AT4G31040 511 / 2e-180 CemA-like proton extrusion protein-related (.1) Potri.006G080100 [exp] 479 / 2e-166 AT4G31040 497 / 5e-175 CemA-like proton extrusion protein-related (.1) Potri.013G162300 [exp] 64 / 2e-11 ATCG00530 338 / 4e-119 CemA-like proton extrusion protein-related (.1) Potri.016G094100 [exp] 62 / 1e-10 ATCG00530 333 / 5e-117 CemA-like proton extrusion protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03040 [flax] [poplar] CemA CemA family
Representative CDS sequence Show only first row Show all	>Lus10040575 pacid=23157620 polypeptide=Lus10040575 locus=Lus10040575.g ID=Lus10040575.BGIv1.0 annot-version=v1.0 ATGGCAGTGGTCCCTTTCGCCTGCCCATATAAAGAAGAAGATGCTGGTTGGAGCTCCAACTACTTGATGACCACTTCACTGGTTTTGTCCCAACAGTTTC TACTCTTTAACCAATCCCTTGGTTGGAAGTCTCGTTCCTCCCTTGCTTCCTCCACTTTCCGGTGCCACAGGGGTTATTTGGGGAGGAAGAATTGTGAGTT CATCCCGAATTGCAGTAAGAAGCATTCCAAGAAGAGGAAGACCAGTTGGTGGCAGAGCTTTTTCTTTAACGACGATGGGAATTGGCTAGGTTTGAGAGAC GATGATATTGAGGAGGAAGAGGAGGAGCTAACTGAAGATGGGTTGAGTGAGGAAGAAGCGGAGGAGTTGTCAGAAGCGGAGGAGTTGTCAGAAGCGGAGA AATTCGAAGCGTGGAAGAAGAGAGCTGAGGCGATTGTTGAGTTGAGAGAAGCTCAAGAGGAGATGCTGAATGAGGAGAGTAGAAGGTGGGAGGATTGGAT TGTGGATGATGAAGATGATGGTTTTGACCGTGGTGGTGGTTCTTGGTCCAACTTGGACGGAAATGGTAGCGAGGATTCAGATTGGGATCCTAATGCCTTG CTCCCACGTACTACATTTGTTCAGTCTGTTGAGGATATTGTTCTTGGTAGGGATGATGAGGATTTGCTTTACGAAGACCGCGTTTTTAGATTCGCTTCTC TCAATTCTGCTAAATATTTGGCACTACTGATTATAATACCCTGCACTCTCGACTTTCTGGTTCATGACTATGTCCTCATGCCTTTCTTGGACAGATACGT GAAGACGGTGCCACTTGCGGCAGAGATGCTTGATGTGAGAAAGGATCAAAAGCTTGAGATGGTGAAGGACTTAAAAATGGAAAGAACCAGATTGAGACTA GAGGTAGACATGGGTGTAGCCCCGCCACTCTCAGATGATCAAGTTTGGTTGGAGTTACATCACAAAGCGTTAGAGTTACGAGATGAGTGGAGGCTAGAAA ATCGTAAAGCATTCGCAAACATATGGTCCGATATGGTATTTGGGATATCATTGTTCTTGCTTTTGTACTTCAATCAGAATAAAGTAGCTTTGTTGAAGTT CACAGGGTACAAATTAATAAATAATATAACCGATTCAGGGAAGGCATTTACAATTATACTCATCAGCGATATTCTTTTAGGGTACCATTCTGAATATGGC TGGGAATCATTTTTGGAGCTAATAGTCGAACATTATGGGATACAAATTGATCCCTCGGCCATTACCATCTTTGTGTGCATTGTTCCTGTTACAACTGATG CATGCGTAAAGCTTTGGATGTTCAAGTTCCTGCCAAGATTATCACCTCAGTTCTCCATATCCGTTTTCAATCTTACTCTCGCAGATTATGAAGCCCTGAC ACAAAGCTTCCTCCGCCTATCTCCACCGTCGGAGAAGGAAGCTACTCCTCCTCCGGAGCCTACTCCCAAAGGCAAAGATCCCTCATCTTCTCTCTTCCAT CTTTCGTCTATCAAGCCTCTCGAGTCTCCATTGCATTGTCTCTTTCCTTTCTCCCTCTCACTCGCCATGAAGCAGCCTTGGAAACAGGAACCTACTCCCT AA
AA sequence Show only first row Show all	>Lus10040575 pacid=23157620 polypeptide=Lus10040575 locus=Lus10040575.g ID=Lus10040575.BGIv1.0 annot-version=v1.0 MAVVPFACPYKEEDAGWSSNYLMTTSLVLSQQFLLFNQSLGWKSRSSLASSTFRCHRGYLGRKNCEFIPNCSKKHSKKRKTSWWQSFFFNDDGNWLGLRD DDIEEEEEELTEDGLSEEEAEELSEAEELSEAEKFEAWKKRAEAIVELREAQEEMLNEESRRWEDWIVDDEDDGFDRGGGSWSNLDGNGSEDSDWDPNAL LPRTTFVQSVEDIVLGRDDEDLLYEDRVFRFASLNSAKYLALLIIIPCTLDFLVHDYVLMPFLDRYVKTVPLAAEMLDVRKDQKLEMVKDLKMERTRLRL EVDMGVAPPLSDDQVWLELHHKALELRDEWRLENRKAFANIWSDMVFGISLFLLLYFNQNKVALLKFTGYKLINNITDSGKAFTIILISDILLGYHSEYG WESFLELIVEHYGIQIDPSAITIFVCIVPVTTDACVKLWMFKFLPRLSPQFSISVFNLTLADYEALTQSFLRLSPPSEKEATPPPEPTPKGKDPSSSLFH LSSIKPLESPLHCLFPFSLSLAMKQPWKQEPTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	0	1
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	1.0	0.9652
					Lus10043038 [exp]	1.4	0.8955
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	3.5	0.8758
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	3.9	0.8894
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10026878 [exp]	5.2	0.8644
AT2G37678		PAT3, FRY1, FHY...	PHYTOCHROME A SIGNAL TRANSDUCT...		Lus10012123 [exp]	5.7	0.8843
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	5.9	0.8838
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	5.9	0.8742
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10037046 [exp]	6.8	0.8338
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	7.5	0.8696

Compare expression of checked genes

Lus10040575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.