Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25360 577 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 410 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 397 / 8e-132 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 394 / 7e-131 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G68930 389 / 9e-130 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G23330 387 / 5e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 385 / 4e-127 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 380 / 5e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 375 / 9e-125 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 377 / 1e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028106 [exp] 676 / 0 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 394 / 1e-134 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 398 / 2e-134 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 411 / 4e-133 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038741 [exp] 395 / 7e-133 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 405 / 1e-130 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10039117 [exp] 387 / 1e-129 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 391 / 2e-129 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 387 / 4e-128 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G027800 [exp] 638 / 0 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 418 / 6e-141 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G001200 [exp] 409 / 3e-139 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 411 / 2e-137 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 404 / 6e-136 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 411 / 7e-136 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 396 / 2e-132 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 396 / 6e-132 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 395 / 1e-130 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 393 / 1e-130 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040577 pacid=23157825 polypeptide=Lus10040577 locus=Lus10040577.g ID=Lus10040577.BGIv1.0 annot-version=v1.0 ATGAAACTGCAGGGTTTTGATCCGTGCGATTATGCATTTGCTGGAGTGATTACATCATGTGCTTCACTTGGATCGTTGAAATCTGGACGCCAGTTCCATT CTCAGCTTATCCGGTTAGGTTTCGAGTCAAGTCTTTCAGTTGGAAATGCATTGATTACAATGTATGGAAGATGTGGTGTTGTTGAGGATGCACAGACTCT ATTTCGCACTATGCCATCCGTAGATTCAATATCATGGAATGCAATGATTGCTGCCCTGGGCCAGCATGGACATGGCGTGCAAGCTATACAACTTTTTGAA GAGATGTTGAAGGAAGGTATATTGCCTGATCGGATTACCTTTCTAACAGTTCTCTCTGCTTGCAGCCACGCAGGTTTAGTTAAAGAAGGGAATCGATATT TTGATGCAATGCATGATAGTTATGGCATAACCCCGGGCGAGGATCATTATGCCCGCATGGTTGATTTGTTTTGTCGAGCTGGAAAGTTTGCAGAAGCAGA AGATATGATTGGAAAAATGGAATTTCAGCCAGGCCCACAAATATGGGAAGCTTTTCTTGCAGGTTGTCGTAATCATGGCAATATGGAATTAGGGATCCAG GCTGCTGAACGCCTCTTTGAGATGATTCCCCAAAATGACGGAACATATGTCCTTCTGTCAAATATGTATGCTGCAAAAGGGCTTTGGAATAATGTATCAA AAGTAAGGAAATTAATGAGAGACCAGGGGGTGAAGAAGGAGCCAGCATGTAGCTGGGTTGAAGCTGAAAACAAGGTCCATGTATTCTTGGTTGATGACAC TGCACATCCTGAAGTAAATGCTATATACAATTATCTTGAGCAGCTCGGCCTGGAAATGAGGAAATTGGGATATGTACCAGATACAAGATTCGTTTTGCAT GATATGGAATCTGACCAAAAGGAACATGCCCTTTCTACTCACAGTGAGAAACTTGCAGTTGCTTTTGGACTTATGAAACTTCCACCTGGGGCCACTGTTA GGGTCTTCAAGAACATTAGGATATGTGGCGATTGCCACAATGCTATCAAATATATTTCAAAACTAGCGGGGAGGGAGATTGTCGTGAGGGATGGTAAGAG GTTTCATCACTTTAGGGATGGTGACTGTTCTTGCGGAAACTATTGGTAG
AA sequence Show only first row Show all	>Lus10040577 pacid=23157825 polypeptide=Lus10040577 locus=Lus10040577.g ID=Lus10040577.BGIv1.0 annot-version=v1.0 MKLQGFDPCDYAFAGVITSCASLGSLKSGRQFHSQLIRLGFESSLSVGNALITMYGRCGVVEDAQTLFRTMPSVDSISWNAMIAALGQHGHGVQAIQLFE EMLKEGILPDRITFLTVLSACSHAGLVKEGNRYFDAMHDSYGITPGEDHYARMVDLFCRAGKFAEAEDMIGKMEFQPGPQIWEAFLAGCRNHGNMELGIQ AAERLFEMIPQNDGTYVLLSNMYAAKGLWNNVSKVRKLMRDQGVKKEPACSWVEAENKVHVFLVDDTAHPEVNAIYNYLEQLGLEMRKLGYVPDTRFVLH DMESDQKEHALSTHSEKLAVAFGLMKLPPGATVRVFKNIRICGDCHNAIKYISKLAGREIVVRDGKRFHHFRDGDCSCGNYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25360			Pentatricopeptide repeat (PPR)...		Lus10040577 [exp]	0	1
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	2.6	0.8728
AT5G14520			pescadillo-related (.1)		Lus10002201 [exp]	9.7	0.8127
AT1G61670			Lung seven transmembrane recep...		Lus10030521 [exp]	14.6	0.7110
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	17.9	0.7694
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Lus10030542 [exp]	19.6	0.7976
AT2G31060		EMB2785	EMBRYO DEFECTIVE 2785, elongat...		Lus10039896 [exp]	19.7	0.7804
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	23.0	0.7775
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	23.8	0.7872
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	24.7	0.6789
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	25.0	0.7890

Compare expression of checked genes

Lus10040577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.