Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16280 169 / 1e-50 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT1G19440 168 / 4e-50 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT1G68530 162 / 6e-48 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT2G26250 163 / 7e-48 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT3G52160 157 / 1e-46 KCS15 3-ketoacyl-CoA synthase 15 (.1) AT4G34520 155 / 3e-45 KCS18, FAE1 FATTY ACID ELONGATION1, 3-ketoacyl-CoA synthase 18 (.1) AT4G34250 153 / 1e-44 KCS16 3-ketoacyl-CoA synthase 16 (.1) AT2G26640 152 / 4e-44 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT4G34510 151 / 8e-44 KCS17, KCS2 3-ketoacyl-CoA synthase 17 (.1) AT1G25450 150 / 2e-43 KCS5, CER60 ECERIFERUM 60, 3-ketoacyl-CoA synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028105 [exp] 279 / 5e-93 AT2G26250 607 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10002533 [exp] 175 / 9e-53 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10009799 [exp] 173 / 4e-52 AT2G26250 797 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10001657 [exp] 172 / 1e-51 AT1G19440 892 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10040796 [exp] 171 / 5e-51 AT2G26250 861 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10016528 [exp] 170 / 1e-50 AT2G26250 866 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Lus10042318 [exp] 169 / 2e-50 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10026345 [exp] 169 / 2e-50 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10034319 [exp] 159 / 8e-47 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080400 [exp] 238 / 6e-77 AT2G26250 575 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.006G218000 [exp] 173 / 8e-52 AT2G26250 896 / 0.0 FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) Potri.009G116700 [exp] 169 / 2e-50 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.014G196200 [exp] 169 / 2e-50 AT1G19440 854 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.004G155600 [exp] 168 / 4e-50 AT1G19440 899 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Potri.010G125300 [exp] 162 / 6e-48 AT1G68530 915 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.018G032200 [exp] 158 / 2e-46 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 157 / 4e-46 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G120300 [exp] 155 / 2e-45 AT1G68530 895 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) Potri.014G104300 [exp] 154 / 1e-44 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF08392 [flax] [poplar] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [flax] [poplar] Thiolase PF08541 [flax] [poplar] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Lus10040578 pacid=23157837 polypeptide=Lus10040578 locus=Lus10040578.g ID=Lus10040578.BGIv1.0 annot-version=v1.0 ATGGATAATAGAAGCTTCAGAAGCATCCATATAAAGGAAGATGCAGAAGGGAAGAAAGGCATCTCAGTGAGTAAAGATGTGATTGAAATTGGAGGCCATG CACTTAAGGCCAACATTACAACATTAGGACCCCTGGTTCTTCCTGTATCAGACCAATTCCATTTCTTCACCAACTTGCTATTCAAAAAAAAGATCAAGCC TTACATCCCTGACTACAAACTTGCCTTTGACCACATATGCATCTTGGCAACAAGTAAGAAAGTGATAGACGAGTTACATAACAACTTGGAACTCACAGAG GAGCACATGGAGGCGTCCAGGAAGACTCTCGAGAGGTTCGGGAACACTTCGAGCAGTAGCGTGTGGTACGAGCTAGGTTACCTGGAAGCAAACTCCCCCT TCAAAAGAGGAGACAGGATCTGCAAATTGCTTTTAGGTTCTGGTTTCAAGTGTAACAGTGTCGTCTGGAAGGCTCTTAAGAACGTTAGGAAAGCTGAAGT TAGTCCATGGTTTCCAGATTCTTAA
AA sequence Show only first row Show all	>Lus10040578 pacid=23157837 polypeptide=Lus10040578 locus=Lus10040578.g ID=Lus10040578.BGIv1.0 annot-version=v1.0 MDNRSFRSIHIKEDAEGKKGISVSKDVIEIGGHALKANITTLGPLVLPVSDQFHFFTNLLFKKKIKPYIPDYKLAFDHICILATSKKVIDELHNNLELTE EHMEASRKTLERFGNTSSSSVWYELGYLEANSPFKRGDRICKLLLGSGFKCNSVVWKALKNVRKAEVSPWFPDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16280		KCS9	3-ketoacyl-CoA synthase 9 (.1)		Lus10040578 [exp]	0	1
AT1G11270			F-box and associated interacti...		Lus10025893 [exp]	2.4	0.8677
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10028942 [exp]	6.5	0.8469
AT5G10530			Concanavalin A-like lectin pro...		Lus10020447 [exp]	9.2	0.8568
AT5G27530			Pectin lyase-like superfamily ...		Lus10036205 [exp]	12.6	0.8203
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10004841 [exp]	16.5	0.8466
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031269 [exp]	17.9	0.7797
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Lus10033866 [exp]	21.5	0.7920
AT5G24670		TAD3, EMB2820	tRNA adenosine deaminase 3, EM...		Lus10040753 [exp]	21.6	0.8108
AT2G45910			U-box domain-containing protei...		Lus10014771 [exp]	22.1	0.7994
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	24.2	0.7725

Compare expression of checked genes

Lus10040578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.