Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75340 199 / 7e-60 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040567 [exp] 649 / 0 AT1G75340 227 / 1e-70 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10028100 [exp] 565 / 0 AT1G75340 232 / 8e-72 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G081100 [exp] 273 / 2e-88 AT1G75340 194 / 4e-57 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10040585 pacid=23157864 polypeptide=Lus10040585 locus=Lus10040585.g ID=Lus10040585.BGIv1.0 annot-version=v1.0 ATGCCTGTGAAGAGAGAACCTTGCAGGAACTTTCAGCGGGGAAGTTGCCAATACGGAGAAAGGTGTAGATATCTTCATGTAGTCCAGCAACAGCCAAAAC AAAGTAATCCCTTTGGATTTGGGTCTGGACAGCAACAGCAACAGAAACAGCAGCAGAGTTCCAACCCTTTTGGTTTTGGGGCCAAACAGCAGCAATTCAA GCCTTTTGAGAATAAATGGAGCCGTTCCAATCCTTCGGATAATGGAGCTGGTCATGCTCCATCATCCTCTAAACACCAACCTGATAGCAAATCCCAGGCT GCTAATCATACGTGCACGGACCCTGAATCCTGCAAACGTTCGATTGCTGAAGATTTTGAGCATGAGAAGCCAATTTGGAAGCTCACTTGCTACGGTCATG CCAGAAATGGTCCTTGTGACGTTGTTGGCGACATTAGCTATGAAGAACTACGAGCTGCTGCTTATGAAGATGCCAAGCGTGGGATAAATGTGCAGTCAAT TATTGAGAGGGAGAGAAATCTATCAAATTCTAAGTTGGTTGAGTTCCAGAACCTTCTCCAAACACTATATGTTGCACGATCAGGATCTGCTGTGGGCATG CATGGAGCCACTACCAATGGAATTTCACCTACTAGTTCAAGCAGCGCTCCCCTTCAAGTCTCTAGCTTTAACCAACTCGGTCCATCTCTTAATACTGGAT TTGGAGCAAGGCCACCTTCGCAAGTGAATAATTTGTTTGGGCAACCAAGTGTATTTCCAAACTCTACACAGAATGCAGGAGTGTTTGGTACAAATAACGT CGCTTCTGCAAATGTTCCATTTGGAGGCCAACTTGACAGTCAGCACCACAGAAGTTCCTTTCCTAACGTTGCAGGATTTCCTACCAACAGTGCAGTATCA TGTGGAGGAAGCAATCTATTATCTTCTTCTCAATCATTCACTACGCAGAACCCTATTAGTTCCAATCTGAATGCAGAAGCATCAAGTAGTCTGGCAGTAA ATAGTGTCGAAAAGGAAAAGGCTTCTGGGGATAGGAGCATCTGGTCGAAAGAAACATGGAAACCTGGAGAGGTAAAAAGACTTGTGATGTAG
AA sequence Show only first row Show all	>Lus10040585 pacid=23157864 polypeptide=Lus10040585 locus=Lus10040585.g ID=Lus10040585.BGIv1.0 annot-version=v1.0 MPVKREPCRNFQRGSCQYGERCRYLHVVQQQPKQSNPFGFGSGQQQQQKQQQSSNPFGFGAKQQQFKPFENKWSRSNPSDNGAGHAPSSSKHQPDSKSQA ANHTCTDPESCKRSIAEDFEHEKPIWKLTCYGHARNGPCDVVGDISYEELRAAAYEDAKRGINVQSIIERERNLSNSKLVEFQNLLQTLYVARSGSAVGM HGATTNGISPTSSSSAPLQVSSFNQLGPSLNTGFGARPPSQVNNLFGQPSVFPNSTQNAGVFGTNNVASANVPFGGQLDSQHHRSSFPNVAGFPTNSAVS CGGSNLLSSSQSFTTQNPISSNLNAEASSSLAVNSVEKEKASGDRSIWSKETWKPGEVKRLVM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040585 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	1.0	0.7983
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	2.0	0.7633
AT5G45760			Transducin/WD40 repeat-like su...		Lus10007297 [exp]	13.5	0.7269
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	25.1	0.6611
AT3G46850			Subtilase family protein (.1)		Lus10016482 [exp]	26.8	0.6952
					Lus10022247 [exp]	33.0	0.6003
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	35.0	0.6441
AT3G12040			DNA-3-methyladenine glycosylas...		Lus10021071 [exp]	38.7	0.6468
AT3G24730			mRNA splicing factor, thioredo...		Lus10011878 [exp]	39.2	0.6257
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10040567 [exp]	40.0	0.6600

Compare expression of checked genes

Lus10040585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.