Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57240 343 / 6e-116 ORP4C OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) AT4G25850 332 / 8e-112 ORP4B OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) AT4G25860 323 / 3e-108 ORP4A OSBP(oxysterol binding protein)-related protein 4A (.1) AT3G09300 79 / 1e-15 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G02100 74 / 5e-14 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT5G59420 69 / 1e-12 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT1G13170 53 / 3e-07 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT2G31030 52 / 6e-07 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT4G08180 52 / 6e-07 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 51 / 1e-06 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021603 [exp] 689 / 0 AT5G57240 368 / 4e-126 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Lus10024386 [exp] 75 / 2e-14 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 73 / 7e-14 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10025635 [exp] 60 / 2e-09 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025695 [exp] 59 / 4e-09 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10028087 [exp] 59 / 5e-09 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10035967 [exp] 57 / 2e-08 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024613 [exp] 55 / 6e-08 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10036949 [exp] 51 / 1e-06 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143600 [exp] 433 / 2e-151 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 421 / 1e-146 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Potri.006G086400 [exp] 77 / 2e-15 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.002G088000 [exp] 54 / 1e-07 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.001G121700 [exp] 52 / 7e-07 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.005G172900 [exp] 52 / 7e-07 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.019G015111 [exp] 50 / 2e-06 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 50 / 3e-06 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.003G111600 [exp] 45 / 9e-05 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein
Representative CDS sequence Show only first row Show all	>Lus10040586 pacid=23157615 polypeptide=Lus10040586 locus=Lus10040586.g ID=Lus10040586.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAGGAAGAAGAAGAAGAAGGGACGATGGAGGAGGAGAAAAAAGTGGAGGCCGTAGTACTTACAAAGCCCATGTCAGTGGATGCTGATCATC ACTCCTCGGATTACCGGACTCCAAACATCGTCCAACGTATCTTAACCCTCTTCAAAAACGTACGCCTTGGATCAGAACTCACCGCCAATTTCCAGCTCCC ACCTTCATTCAACTACCCAAAGTCGCAGCTCCAGCTGTACGGAGAATCCATCTACAGCGCACGAAAAGACATCCTCGCCGAATGCAACGACGCCTTCGAT CCCCTTGAGAGGTTTACCAGAGTCGTCGGTTGGAGCATTTCAACAACTCGCCCATCAATCTTCGGATTTGCTCCTTACAACCCGATCCTAGGCGAGACCC ACCACGTCTCGTCTCGTTCGTTAAATCTACGACTTGAACAGGTGTCACACCATCCTCCGATCACGGCACTCCACGCCACTGACCAGAGCCACAACATCTC CATCGTCAGCTTCCATCGCCCCGTGCCGAGGTTCCTTGGTACTAAAGTTGAGGTTGAGGTGCAGGGGAAGAGGATACTTAAGCTTCTCAATCATGACGAT GAAACTTACGTCATGAATTCACCTACTCTCTTGATCAAGTTCTTACCCCCCTCTGTTGACTGGGTTGGAACTGTGGATATCAGCTGCCAACAGACTGGAT TTGAAGCTCGCTTATCCTACTTTACTTCTTCCCTACTAGGACGCACTAGTAATAATAACTCCATCGATGGCAAAATCTACCACAAGTCAACTCCATCTTC TCCCAGAACCTTGCTCTACACATTAAGTGGTCACTGGACCAGTAGTGTTAAAATAAAAGATCAAAATGGAGGTGCAGAACGAGTTATATACAATGCGAAA GAAGTTGCCTCAAAATTGAAAACCCCTGTTCTCAAATATCCACAGAAAGTGTTAGGGAGCGAGTCGACATTGGTGTGGAGTGAGGTGAGCAGAGCAATAA TGAGCCAAAACTGGGAAAAGGCAAAGGAAGCAAAGAGAGCAGTAGAGGAAAAACAGAGGGAGATTGCCAAGGCAAGGAGATCAAGTGGAGAGATTTGGGT TCCTAAATATTTTACTGCAACCTCCTCCTCCTCTAAAGATGAATATTTCCCTACTGATAAACTAGTCCCTCCAGCTCCCATTGTTATTCCCTTCTAG
AA sequence Show only first row Show all	>Lus10040586 pacid=23157615 polypeptide=Lus10040586 locus=Lus10040586.g ID=Lus10040586.BGIv1.0 annot-version=v1.0 MAEEEEEEEGTMEEEKKVEAVVLTKPMSVDADHHSSDYRTPNIVQRILTLFKNVRLGSELTANFQLPPSFNYPKSQLQLYGESIYSARKDILAECNDAFD PLERFTRVVGWSISTTRPSIFGFAPYNPILGETHHVSSRSLNLRLEQVSHHPPITALHATDQSHNISIVSFHRPVPRFLGTKVEVEVQGKRILKLLNHDD ETYVMNSPTLLIKFLPPSVDWVGTVDISCQQTGFEARLSYFTSSLLGRTSNNNSIDGKIYHKSTPSSPRTLLYTLSGHWTSSVKIKDQNGGAERVIYNAK EVASKLKTPVLKYPQKVLGSESTLVWSEVSRAIMSQNWEKAKEAKRAVEEKQREIAKARRSSGEIWVPKYFTATSSSSKDEYFPTDKLVPPAPIVIPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10040586 [exp]	0	1
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	2.2	0.8834
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	4.7	0.8371
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	6.7	0.8328
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	7.7	0.7610
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	8.0	0.7969
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10023274 [exp]	8.0	0.7682
AT4G02090			unknown protein		Lus10010014 [exp]	9.2	0.8202
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	10.2	0.7688
AT2G16760			Calcium-dependent phosphotries...		Lus10015347 [exp]	17.0	0.7504
AT1G49420			Heavy metal transport/detoxifi...		Lus10038786 [exp]	19.9	0.7649

Compare expression of checked genes

Lus10040586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.