Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07180 540 / 0 Protein kinase superfamily protein (.1.2) AT5G01020 422 / 5e-146 Protein kinase superfamily protein (.1) AT2G05940 389 / 4e-132 RIPK RPM1-induced protein kinase, Protein kinase superfamily protein (.1) AT2G26290 375 / 2e-127 ARSK1 root-specific kinase 1 (.1) AT5G56460 374 / 7e-127 Protein kinase superfamily protein (.1) AT2G28930 368 / 1e-124 APK1B protein kinase 1B (.1.2.3) AT5G02290 367 / 2e-124 NAK Protein kinase superfamily protein (.1.2) AT3G01300 370 / 4e-124 Protein kinase superfamily protein (.1) AT1G07570 366 / 9e-124 APK1A Protein kinase superfamily protein (.1.2.3) AT5G35580 368 / 1e-123 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027589 [exp] 543 / 0 AT2G07180 545 / 0.0 Protein kinase superfamily protein (.1.2) Lus10008546 [exp] 534 / 0 AT2G07180 534 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036762 [exp] 418 / 3e-143 AT5G01020 672 / 0.0 Protein kinase superfamily protein (.1) Lus10023794 [exp] 384 / 2e-131 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10024391 [exp] 383 / 1e-130 AT5G02290 563 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010835 [exp] 381 / 7e-130 AT5G02290 561 / 0.0 Protein kinase superfamily protein (.1.2) Lus10034897 [exp] 379 / 2e-127 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10033429 [exp] 375 / 4e-126 AT2G05940 636 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Lus10000954 [exp] 370 / 1e-125 AT1G07570 535 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G149100 [exp] 610 / 0 AT2G07180 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G079600 [exp] 585 / 0 AT2G07180 539 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G143200 [exp] 430 / 1e-148 AT5G01020 655 / 0.0 Protein kinase superfamily protein (.1) Potri.006G113600 [exp] 430 / 1e-148 AT5G01020 664 / 0.0 Protein kinase superfamily protein (.1) Potri.006G219300 [exp] 394 / 2e-134 AT2G05940 536 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.006G141500 [exp] 389 / 3e-132 AT2G05940 638 / 0.0 RPM1-induced protein kinase, Protein kinase superfamily protein (.1) Potri.001G002300 [exp] 384 / 2e-131 AT5G56460 608 / 0.0 Protein kinase superfamily protein (.1) Potri.009G031300 [exp] 380 / 3e-129 AT2G28930 603 / 0.0 protein kinase 1B (.1.2.3) Potri.016G094300 [exp] 379 / 4e-129 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G128500 [exp] 379 / 1e-128 AT1G61590 622 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040588 pacid=23157828 polypeptide=Lus10040588 locus=Lus10040588.g ID=Lus10040588.BGIv1.0 annot-version=v1.0 ATGGGGATTTGTTGCAGCATCGACGAACGCCAGCAATTATCCAAAGATGATCGTCAATTTTCTTCCACGACATCCAAGGGAAATGAATCTATGAGGTCTG CTGCTGTAGTGAATAAGCTGGACTCATTCGATACAGAAGCAAGTCTAAGCAACCCTGTGAAAGCTCCGATGAACGTCTCGGATCTACGAGATAACCCTGG ATATAGTAATGTTGACATCTTTACATATCAGGAAATGAGAATGGCAACAAAGTTCTTTAGGCCGGATTATATTCTTGGTGACGGTGGATTTGGAGTTGTT TACAAGGGCGTCATAGATGAGAGTGTAAGGCCGGGCTATGCCGCCACAGCCGTTGCCATCAAGGAGCTTAATCCCGAGGGCTTGCAAGGAGACCGTGAGT GGCTGGCGGAAGTCAATTATTTGGGTCAGCTCAGCCATTCAAACCTTGTCAAGCTTATTGGATACTGCTGTGAGGAAGAGCACAGACTTTTGGTGTATGA GTACATGGCAAGCGGAAGCCTGGAAAAGCAACTTTTTCGAAGAGTCGGTTGTACTTTGACATGGTCGAAACGAATGAAGATTGCTCTAGATGCTGCAAGA GGACTTGCCGTTCTTCATGGTGCAGAAAGATCTATCATTTACCGTGATTTCAAGACATCAAATATCCTTCTGGATGAGAAGTTCAATGCAAAGCTTTCAG ATTTTGGGCTAGCCAAAGATGGACCAATGGGAGACCAGACTCATGTATCAACACGGGTGATGGGTACCTATGGTTATGCTGCTCCCGAGTATGTAATGAC TGGGCATTTGACAGCTCGAAGTGATGTATACGGTTTTGGAGTAGTGCTGTTAGAGTTGCTTCTGGGAAGGAAAGCACTAGACAAGAGCCGGCCTAGCAGA GAACACAATTTAGTGGAATGGGCACGACCACTTTTGAATCAAAACAAGAAGATATTGAGAATACTAGATCCCAGAATGGAGGGCCAGTACTCGGTTAGGA CAGCGATGAGAGTAGCAAACCTAGCATACCAATGCCTTAGCCAAAATCCAAAGGGAAGACCATTGATGAAGCAAGTGGTTGAAGTACTAGAGAGTGTACA GTCCAAGGACATGGATGAAATGTTTGAGAACAACCATAGAGGTGTGACGCTTTACGAGGATCCACAACGTGATCCTTCGGGTAAGGGAAGGAGTAGGAGA GAGGACGAAGGAGGATCGCGGAGGAACAGACATGGAAGTGGGAGTAATGCCAGCGAGCTTCCTGTAGAGCAACTTAACAACGCATCTTCTCCTGATTTGA AGAATGTGGAACAGATGATAATGGGCATGAACCGTGAGTATGGGGAAATGTAA
AA sequence Show only first row Show all	>Lus10040588 pacid=23157828 polypeptide=Lus10040588 locus=Lus10040588.g ID=Lus10040588.BGIv1.0 annot-version=v1.0 MGICCSIDERQQLSKDDRQFSSTTSKGNESMRSAAVVNKLDSFDTEASLSNPVKAPMNVSDLRDNPGYSNVDIFTYQEMRMATKFFRPDYILGDGGFGVV YKGVIDESVRPGYAATAVAIKELNPEGLQGDREWLAEVNYLGQLSHSNLVKLIGYCCEEEHRLLVYEYMASGSLEKQLFRRVGCTLTWSKRMKIALDAAR GLAVLHGAERSIIYRDFKTSNILLDEKFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLELLLGRKALDKSRPSR EHNLVEWARPLLNQNKKILRILDPRMEGQYSVRTAMRVANLAYQCLSQNPKGRPLMKQVVEVLESVQSKDMDEMFENNHRGVTLYEDPQRDPSGKGRSRR EDEGGSRRNRHGSGSNASELPVEQLNNASSPDLKNVEQMIMGMNREYGEM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07180			Protein kinase superfamily pro...		Lus10040588 [exp]	0	1
AT1G16240		ATSYP51, SYP51	syntaxin of plants 51 (.1.2.3)		Lus10002446 [exp]	3.7	0.7974
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	4.6	0.7844
AT5G10290			leucine-rich repeat transmembr...		Lus10023146 [exp]	8.8	0.7536
AT1G75260			oxidoreductases, acting on NAD...		Lus10012616 [exp]	12.0	0.7104
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Lus10031956 [exp]	13.1	0.7944
AT4G01897			unknown protein		Lus10038061 [exp]	17.2	0.7415
AT1G07020			unknown protein		Lus10042256 [exp]	19.2	0.7241
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10013020 [exp]	23.0	0.7446
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10043083 [exp]	23.8	0.7525
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10022155 [exp]	23.8	0.7589

Compare expression of checked genes

Lus10040588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.