Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65560 419 / 2e-145 Zinc-binding dehydrogenase family protein (.1) AT5G16970 367 / 5e-125 AT-AER alkenal reductase (.1) AT3G03080 365 / 2e-124 Zinc-binding dehydrogenase family protein (.1) AT1G26320 362 / 4e-123 Zinc-binding dehydrogenase family protein (.1.2) AT5G17000 362 / 4e-123 Zinc-binding dehydrogenase family protein (.1) AT5G16990 359 / 5e-122 Zinc-binding dehydrogenase family protein (.1) AT5G16960 350 / 2e-118 Zinc-binding dehydrogenase family protein (.1) AT5G37940 346 / 7e-117 Zinc-binding dehydrogenase family protein (.1) AT5G37980 346 / 9e-117 Zinc-binding dehydrogenase family protein (.1) AT3G59845 345 / 1e-116 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010988 [exp] 365 / 4e-124 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 361 / 1e-122 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 360 / 2e-122 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 357 / 3e-121 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 352 / 4e-119 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 348 / 2e-117 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 344 / 5e-116 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 344 / 9e-116 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10021609 [exp] 333 / 3e-112 AT2G07340 191 / 3e-61 PREFOLDIN 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177700 [exp] 451 / 3e-158 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 387 / 1e-132 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 379 / 7e-130 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 374 / 5e-128 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G002950 [exp] 364 / 9e-124 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.007G143800 [exp] 359 / 6e-122 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143600 [exp] 357 / 4e-121 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G005700 [exp] 357 / 2e-120 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 352 / 4e-119 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G006000 [exp] 347 / 4e-117 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0200 [flax] [poplar] Prefoldin PF01920 [flax] [poplar] Prefoldin_2 Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10040589 pacid=23157923 polypeptide=Lus10040589 locus=Lus10040589.g ID=Lus10040589.BGIv1.0 annot-version=v1.0 ATGAGAGAAGTGGAGAACAAACAGGTAGTGCTGAAATCCTACATCACTGATGGCAGAGCGCCGACAAAGGACGACATGGACGTTACCGTCTCCAAGCTGC TGAATCTGAAAGCCCCAAAAGGATCTGGCGCATTCCTCGTCAAGAATCTTTATCTCTCTTGCGATCCATACATGCGCGGTCGAATGCGCCCTCCTTCCTC TTCCTCTTACATCCCTTCTTTCCTCCCCGGCCATCCAATTGAAGGTTTCGGGGTGTCAAAGGTAGTCGATTCGGACAATCCGGATTATAAGGCCGGCGAG TTGATCGCCGGGATGACCGGTTGGGAAGAGTACAGCCTGATTCGGGAACCCCAACAGATGAGAAAGATAAACAAAAACGACGCCATTCCTTTATCTTACA ATCTGGGCCTTCTAGGGATGCCAGGGTTTACTGCTTACTGTGGCTTTTACAAGCTCTGTTCGCCTAAACCAGGTGATTTCGTCTTCGTCTCTGCAGCTTC GGGAGCCGTTGGGCAGATAGTCGGACAACTGGCCAAGTTGCAAGGCTGTTATGTCGTCGGTAGCGCTGGTTCCACCTCCAAGGTTGATATCCTCAAGGGG AAGATGGGATTTGATGCTGCTTTCAACTACAAACAAGAGCTTGATCTCGATCAAGCTTTGAAAAGGCACTTTCCGGAAGGGATCGACATCTACTTTGACA ACGTGGGAGGCGAAATGCTGGACGCAGCACTCTTGAACATGAAGGTGAATGGTAGGATCGCAGTTTGCGGCATGGTTTCCCAGAACAGTGTCAGTGATCC TGGTGCTGGAATTCACAACATCTTCAGCGTCTGTAGCAAGAGAATCACGATGCAGGGCTTTCTGCAAAGTGATTTCTTACATCTTTACCCGAGCTTCTTG GACCATGTCACTGGACACTACCTAAAGCGGAACATTATCTACGTCGAGGACATGGACGATGGGCTAGACAGAGCTCCAGCTGCCCTTGCTGGACTGTTCA CGGGCCACAACGTCGGCAAGAAAGTTGGCAATCGTTCCCTCGTCCATGCCGCTAATTTATCTAGCAACAAGGCTAATCTTCCTCAGCCGAACAAGCAGCA GCTCATCATCAACTTCAATGAAGATCCGCTATCACCGTTTTCAGATCCATCGCCGTTTATTTCACTGTTAAGGAGAACGTTTGTCTTGGAACCTAAACCT ATCTTGATGACTGAGCAAGAGCAAAAGCACAAGGACAGTGAAGTTGCAATAGCATCACTGCAGACCTCCAAAGAGTATCTGGAGAAGCAGATTGGTGAGG TGGAGAACAACCTGAGGGAACTGTTACAGCAGGATCCTGGTCTGGCCCGGCAGATTATGTCTATGAGCGTCTAA
AA sequence Show only first row Show all	>Lus10040589 pacid=23157923 polypeptide=Lus10040589 locus=Lus10040589.g ID=Lus10040589.BGIv1.0 annot-version=v1.0 MREVENKQVVLKSYITDGRAPTKDDMDVTVSKLLNLKAPKGSGAFLVKNLYLSCDPYMRGRMRPPSSSSYIPSFLPGHPIEGFGVSKVVDSDNPDYKAGE LIAGMTGWEEYSLIREPQQMRKINKNDAIPLSYNLGLLGMPGFTAYCGFYKLCSPKPGDFVFVSAASGAVGQIVGQLAKLQGCYVVGSAGSTSKVDILKG KMGFDAAFNYKQELDLDQALKRHFPEGIDIYFDNVGGEMLDAALLNMKVNGRIAVCGMVSQNSVSDPGAGIHNIFSVCSKRITMQGFLQSDFLHLYPSFL DHVTGHYLKRNIIYVEDMDDGLDRAPAALAGLFTGHNVGKKVGNRSLVHAANLSSNKANLPQPNKQQLIINFNEDPLSPFSDPSPFISLLRRTFVLEPKP ILMTEQEQKHKDSEVAIASLQTSKEYLEKQIGEVENNLRELLQQDPGLARQIMSMSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G65560			Zinc-binding dehydrogenase fam...		Lus10040589 [exp]	0	1
AT2G03350			Protein of unknown function, D...		Lus10026639 [exp]	15.0	0.7629
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10020234 [exp]	16.7	0.7553
AT3G54880			unknown protein		Lus10038690 [exp]	22.4	0.6498
AT1G18265			Protein of unknown function, D...		Lus10020457 [exp]	24.7	0.7486
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022073 [exp]	28.9	0.7212
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10043440 [exp]	30.0	0.6972
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10020241 [exp]	31.5	0.7207
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	37.1	0.7139
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	42.7	0.6681
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	50.5	0.7143

Compare expression of checked genes

Lus10040589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.