Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75820 550 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 435 / 1e-140 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 430 / 1e-138 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 389 / 4e-123 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 314 / 8e-95 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 305 / 3e-91 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G08590 300 / 3e-89 Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 290 / 3e-86 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 268 / 3e-78 HSL2 HAESA-like 2 (.1) AT1G28440 263 / 3e-76 HSL1 HAESA-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017267 [exp] 554 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10013562 [exp] 546 / 0 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10011585 [exp] 410 / 1e-131 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10039641 [exp] 411 / 7e-131 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 405 / 7e-129 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 378 / 6e-120 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10037358 [exp] 347 / 5e-107 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 345 / 2e-106 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019067 [exp] 293 / 4e-87 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241500 [exp] 582 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 570 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 419 / 4e-134 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 381 / 5e-120 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 371 / 3e-116 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 351 / 1e-108 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.019G021700 [exp] 326 / 4e-99 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G048800 [exp] 325 / 1e-98 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 321 / 3e-97 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G107600 [exp] 315 / 7e-95 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07723 [flax] [poplar] LRR_2 Leucine Rich Repeat CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040592 pacid=23157911 polypeptide=Lus10040592 locus=Lus10040592.g ID=Lus10040592.BGIv1.0 annot-version=v1.0 ATGAAAGATTTGTCCTGCTTTCTGCTATTCTTGCTTCTGATAGCTGTGTCTTCCTCCTCTGCTGGAGAAAATGAGCTTGCTGTGCTTTTGAAGTTAAAAT CCTCCATGATTGGTCCAGGAGGCCAAGGACTCAATGACTGGCAGAAGAATACACAATCTGATCCTTCTGCTCACTGCTCTTTCACAGGTGTCATATGTGA CAGCAACACCCTCACCGTCGTATCTCTCAACGTCTCCTTCCAGAGATTCTACGGCTTCCTCCCACCTGAGATTGGCCTCTTGAACTCACTCGTCAACTTG ACCATTTCCACCAATAGTCGTCTTACTGGGGAAATCCCTCTGGAACTCTCCAACCTTACTTCCCTCAAACTTCTTAACCTCTCCAACAATGCCTTTTATG GAGAATTCCCTGGAGATATCATCACTTCTGGTATGACTCAGCTCCAAACTCTTGACATATACAACAACAACTTCACTGGTCAACTTCCATCTAATGCCAT CGCTAAACTGGTCAACCTCAAACATCTTCATCTCGGTGGCAATTTTTTCTCTGGGGAGGTTCCGGACTCCTACTCTGGGTTGCTGAAGTTGGAGTATTTA GCTCTTTCTGGTAACGGGCTAACGGGGAATGTTCCAGAAAGTTTGTCTCTTTTGAAGAATCTCAAGGAGTTGTATCTGGGTTACTTCAACTCATTCTCAG GTGGGATTCCATCTGGAATGTTTCAGGGTTTGACATCACTTCGAGTTCTTGACATGGCTAGCTGTAACCTATCAGGTGAAATTCCTCCTAGTTTAGGCCA ATTGAAAAACTTGCGGGCATGTTATCTACAGCTTAACCATTTCACTGGTACTATTCCTACTGAATTCTCCTTGCTAAGTAGCTTGAATCTGCTTGATCTC TCGTTGAACAATCTCATCGGAACGATACCTGATATTATTTCCCAGCTCAAGAATATGACACTATTGAACCTGTTTGGAAATGGTCTCACTGGTCCCATAC CAAACTCCATTGGTGATCTCCCCAACCTCCAGGTTTTCCAGGTATGGCAGAACAAGCTGACATCTCAGCTCCCACCAAATCTTGGCAAGAATGGCAAGTT GGAAGTGATTGATGTATCTTTCAATCGCCTCACTGGAAGTGTACCTCAAGACTTGTGCAATGGGAGCAAGTTGAAGAGCTTGATCCTGATGAACAATTTG TTATCTGGACCAGTCCCTCATCAACTTGGTGGATGCAAGTCTCTGATGAAAATCCGAATCCAGAAGAATTTTCTGAATGGTACATTCCCTGGCGGCTTAT TCAACCTTCCTGCATTAACTCTTATGGAGATGAATGACAATGACCTATCTGGTGAGCTTCCTATGGAGATGTCCGGAGGAGACTCAATACTTGAGCTTGT ATCACTCTCTGGCAACAATATTACCGGGAAAATCCCAGCCGCCATGGGAAATCTGAGAAACTTAAAAAGTCTCTCACTTGACAGGAACAGATTCCAGGAT CATTTCCCCAGAGAAATTTTCAACCTCAGGTTTCTTTCAAAGATTAACATCAGTGGCAACAATATCGATGGTGAAATCCCTCTTGAGATTGCCAATTGTA CGTCGTTAATATTGATTGATTTCATCAGGAACAACTTGAGCGGAGAGATCCCACCTGGGATTGTTGGTTTGGAGAATTTGAACCATCTTGATCTTTCAGA AAACCAGCTGACTGGTGGAGTTCCAGATGCGATCCAATACATGTATAGCCTGACCAGCCTTAATCTGTCAGGTAATAAATTATCAGGAAGAGTTCCCAAT GGTGGCCAGTTCCAGGTGTTTGATGAAAGCTCTTATGCTGGAAATCCTGGCCTCTGCTTCCCAGGTAATGGGACTTGCAATGCTAAAACGGTTCGGAATA ACTGTCGCAGACGTTCGTCTTTTAGTATTCTTAAACTTGTAATCACCATATTTTCTCTTTACTACCTATATTTGTGA
AA sequence Show only first row Show all	>Lus10040592 pacid=23157911 polypeptide=Lus10040592 locus=Lus10040592.g ID=Lus10040592.BGIv1.0 annot-version=v1.0 MKDLSCFLLFLLLIAVSSSSAGENELAVLLKLKSSMIGPGGQGLNDWQKNTQSDPSAHCSFTGVICDSNTLTVVSLNVSFQRFYGFLPPEIGLLNSLVNL TISTNSRLTGEIPLELSNLTSLKLLNLSNNAFYGEFPGDIITSGMTQLQTLDIYNNNFTGQLPSNAIAKLVNLKHLHLGGNFFSGEVPDSYSGLLKLEYL ALSGNGLTGNVPESLSLLKNLKELYLGYFNSFSGGIPSGMFQGLTSLRVLDMASCNLSGEIPPSLGQLKNLRACYLQLNHFTGTIPTEFSLLSSLNLLDL SLNNLIGTIPDIISQLKNMTLLNLFGNGLTGPIPNSIGDLPNLQVFQVWQNKLTSQLPPNLGKNGKLEVIDVSFNRLTGSVPQDLCNGSKLKSLILMNNL LSGPVPHQLGGCKSLMKIRIQKNFLNGTFPGGLFNLPALTLMEMNDNDLSGELPMEMSGGDSILELVSLSGNNITGKIPAAMGNLRNLKSLSLDRNRFQD HFPREIFNLRFLSKINISGNNIDGEIPLEIANCTSLILIDFIRNNLSGEIPPGIVGLENLNHLDLSENQLTGGVPDAIQYMYSLTSLNLSGNKLSGRVPN GGQFQVFDESSYAGNPGLCFPGNGTCNAKTVRNNCRRRSSFSILKLVITIFSLYYLYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	0	1
AT3G45850			P-loop containing nucleoside t...		Lus10025275 [exp]	1.0	0.7766
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	3.0	0.7691
AT3G18670			Ankyrin repeat family protein ...		Lus10003282 [exp]	4.0	0.7520
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10003204 [exp]	4.1	0.7330
					Lus10018645 [exp]	5.2	0.7498
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Lus10036696 [exp]	5.3	0.7637
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	5.9	0.7602
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10008054 [exp]	13.0	0.7001
AT2G38510			MATE efflux family protein (.1...		Lus10025237 [exp]	13.5	0.7428
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	18.7	0.6789

Compare expression of checked genes

Lus10040592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.