Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76540 533 / 0 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G20930 527 / 0 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT2G38620 408 / 5e-144 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 407 / 1e-143 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT3G48750 339 / 4e-117 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G67580 254 / 6e-79 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G73690 238 / 4e-76 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G18040 235 / 6e-75 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT5G63370 236 / 2e-74 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G66750 231 / 4e-74 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021611 [exp] 644 / 0 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10003236 [exp] 377 / 1e-130 AT2G38620 493 / 2e-176 cyclin-dependent kinase B1;2 (.1.2) Lus10035614 [exp] 370 / 3e-128 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2) Lus10038755 [exp] 297 / 4e-101 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10038754 [exp] 254 / 8e-84 AT3G48750 407 / 2e-144 cell division control 2 (.1) Lus10015816 [exp] 253 / 6e-78 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 251 / 2e-77 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 239 / 3e-75 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 238 / 1e-74 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003400 [exp] 553 / 0 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 551 / 0 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.016G142800 [exp] 414 / 2e-146 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.006G113200 [exp] 400 / 1e-140 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.004G133500 [exp] 351 / 9e-122 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.010G056900 [exp] 259 / 2e-80 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 254 / 1e-78 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 247 / 7e-77 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G092100 [exp] 245 / 1e-75 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G079100 [exp] 237 / 1e-75 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040593 pacid=23157587 polypeptide=Lus10040593 locus=Lus10040593.g ID=Lus10040593.BGIv1.0 annot-version=v1.0 ATGGAGAATCCAGCTACGACAGCGTCGGTGATGGAGTTATTCGAGAAGTTGGAGAAGGTAGGCGAAGGAACCTACGGCAAAGTCTACAGAGCAAGAGAGA GAGCCACTGGGAAGATCGTGGCTCTGAAGAAGACTCGACTACACGAGGACGACGAAGGAGTCCCTGCCACTACTCTTCGCGAGGTCTCCATCTTGCGAAT GCTCTCCAGGGATCCTCACGTTGTTAGATTGATGGACGTTAAACAAGGGCAGAATAAAGAAGGGAAGACAGTTCTCTACCTTGTGTTTGAGTATATGGAT ACTGACGTGAAGAAGTACATTCGTAGCTTTCGCCAAACAAGGGAGACTATCCCTGTGAACATTGTTAAGAGCTTGATGTACCAATTGTGCAAAGGGGTTG CATTCTGTCACGGGCATGGAATCGTGCACAGGGACCTAAAGCCCCACAATCTCTTGATGGACAGGAAGACAATGATTCTCAAGATTGCAGATCTTGGTCT GGCTCGTGCATTTACTCTCCCAATTAAGAAGTATACGCACGAGATCTTGACTCTTTGGTATAGAGCTCCTGAAGTTCTCTTAGGAGATACCCATTACTCA ATTGCAGTGGACATATGGTCCGTTGGCTGTATATTTGCTGAATTGGTGAATCTGCAAGCTATATTCCAAGGGGATTCAGAGCTGCAGCAGCTTCTGCATA TTTTCAGACTGCTGGGCACACCCAATGAAAAGGTGTGGCCTGGAGTTAGTAGTCTGGTGAACTGGCACGAATATCCCCAATGGAGTCCAAAATGTTTGTC AACTGCTGTGCCTACCCTGGACAAGGATGGGCTGGATCTGCTAGCGCAAATGTTGAAGTATGATCCGTTAAAGCGTATAACAGCAAAGAACGCCATGGAA CACCCTTACTTCAACGATCTCATGAAGGAGGGTCTGTGA
AA sequence Show only first row Show all	>Lus10040593 pacid=23157587 polypeptide=Lus10040593 locus=Lus10040593.g ID=Lus10040593.BGIv1.0 annot-version=v1.0 MENPATTASVMELFEKLEKVGEGTYGKVYRARERATGKIVALKKTRLHEDDEGVPATTLREVSILRMLSRDPHVVRLMDVKQGQNKEGKTVLYLVFEYMD TDVKKYIRSFRQTRETIPVNIVKSLMYQLCKGVAFCHGHGIVHRDLKPHNLLMDRKTMILKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGDTHYS IAVDIWSVGCIFAELVNLQAIFQGDSELQQLLHIFRLLGTPNEKVWPGVSSLVNWHEYPQWSPKCLSTAVPTLDKDGLDLLAQMLKYDPLKRITAKNAME HPYFNDLMKEGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	0	1
AT3G12870			unknown protein		Lus10031776 [exp]	1.7	0.9612
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	1.7	0.9546
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10040514 [exp]	2.0	0.9534
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	3.2	0.9463
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	4.2	0.9558
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	5.5	0.9425
AT1G05440			C-8 sterol isomerases (.1)		Lus10041200 [exp]	5.7	0.9341
AT2G25100			Polynucleotidyl transferase, r...		Lus10028856 [exp]	5.7	0.9097
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10007851 [exp]	6.0	0.9049
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	6.5	0.9378

Compare expression of checked genes

Lus10040593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.