Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008146 [exp] 84 / 5e-20 ND / Lus10001095 [exp] 81 / 3e-19 ND 38 / 0.002 Lus10010518 [exp] 78 / 6e-18 ND / Lus10021602 [exp] 75 / 3e-16 ND / Lus10031757 [exp] 71 / 3e-15 ND 39 / 0.002 Lus10004792 [exp] 72 / 7e-15 ND / Lus10040056 [exp] 66 / 2e-13 AT5G28823 41 / 2e-04 unknown protein Lus10009797 [exp] 63 / 2e-13 ND / Lus10007392 [exp] 56 / 5e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040594 pacid=23157735 polypeptide=Lus10040594 locus=Lus10040594.g ID=Lus10040594.BGIv1.0 annot-version=v1.0 ATGGCGGTTGTCCATTCCTCTCATGCCAGTTCGTCTGCAACGGGCGTGGAGAGCTCTGGTGCTGTTGCACCTTCGACAACTACTTGGGCGTCTGTTGTTG TTGTTCCGGTTAGGGTTACCCTTCATGGTGTTCCTCTGCAGCTTCTTACTGATGACGGTATCGGTTGGATTGTTAGTCGCATTGGCGAGCCTGTTAGTAA TTTCGTTCGGGAAGGGATTAATCTGAAAATCTGTCTTCTCATAAACAAAGGGACTGCTTGTCCGGAATCATGGCCTATTATTATTGATGGTGAGGTTGTG CACATTCCTATTTCCACATATCAAAGTAGAACCTATAAATCAGAGGAGGTGACAAAGAAGGTTTGGAAGATCAAGGTCTTAACTGCCCAACCAAATGCTG TAGTGGTCGCTAATGTCTCTGCAGACAATGGTGCCGAGCCTCATATGCAAGGGGAGGCTCCATCTGCAAGCGTTATTGAGCCACTGGTTGGAGGGGGAAT TGAGAGGGCCATTGAGGCTTCGACAGAAGCGGAGATGACTCCTCATTTTCAACAGATTGTGCTGCCCGAGACTTCTTTGTGA
AA sequence Show only first row Show all	>Lus10040594 pacid=23157735 polypeptide=Lus10040594 locus=Lus10040594.g ID=Lus10040594.BGIv1.0 annot-version=v1.0 MAVVHSSHASSSATGVESSGAVAPSTTTWASVVVVPVRVTLHGVPLQLLTDDGIGWIVSRIGEPVSNFVREGINLKICLLINKGTACPESWPIIIDGEVV HIPISTYQSRTYKSEEVTKKVWKIKVLTAQPNAVVVANVSADNGAEPHMQGEAPSASVIEPLVGGGIERAIEASTEAEMTPHFQQIVLPETSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040594 [exp]	0	1
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	9.4	0.6916
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10039893 [exp]	17.7	0.6799
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	20.3	0.6915
AT4G25330			unknown protein		Lus10012314 [exp]	22.4	0.6492
AT2G01910		ATMAP65-6	Microtubule associated protein...		Lus10031939 [exp]	28.1	0.6903
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	33.0	0.6518
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10005646 [exp]	37.1	0.6091
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10029956 [exp]	41.0	0.6572
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10033232 [exp]	42.6	0.6666
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10027139 [exp]	50.6	0.6758

Compare expression of checked genes

Lus10040594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.