Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43270 80 / 2e-16 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G27370 77 / 3e-15 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G27360 64 / 4e-11 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G02065 59 / 8e-10 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G69170 56 / 2e-08 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G42200 54 / 1e-07 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G57920 51 / 5e-07 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT2G33810 47 / 1e-06 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT1G53160 46 / 1e-05 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT2G47070 47 / 2e-05 SBP SPL1 squamosa promoter binding protein-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021614 [exp] 543 / 0 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10011356 [exp] 79 / 8e-16 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10006411 [exp] 76 / 9e-15 AT5G43270 204 / 1e-61 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 57 / 1e-08 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10000643 [exp] 56 / 3e-08 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10036812 [exp] 55 / 4e-08 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10028181 [exp] 54 / 7e-08 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10042882 [exp] 54 / 8e-08 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10007984 [exp] 54 / 1e-07 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G149900 [exp] 104 / 2e-24 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.003G172600 [exp] 91 / 7e-20 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.001G055900 [exp] 84 / 1e-17 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3) Potri.008G097900 [exp] 61 / 8e-10 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.002G142200 [exp] 59 / 2e-09 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.014G057800 [exp] 59 / 2e-09 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.014G057700 [exp] 58 / 3e-09 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.015G098900 [exp] 54 / 8e-08 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.010G154300 [exp] 54 / 8e-08 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.012G100700 [exp] 54 / 1e-07 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10040595 pacid=23157647 polypeptide=Lus10040595 locus=Lus10040595.g ID=Lus10040595.BGIv1.0 annot-version=v1.0 ATGAGTCATAGTGGAAGAGCAGCAATTGCTTCTCCTTCTTTGACTAGTTGTGTTGCAATGGACTGGAACTTGAAGTCTGCATCCGAGTGGGACTGGGATA ACTTATATGGGTTTAGCTCTAGGACATGTGGCACTCAGAAACAACAAGTAAAGCACTTAAACCCTGAGGCTGAAGGTGAAGGAGTTGGAAGAATCGATAG TGGATTGATCTACTCACACGGATGTGCTGGTGGTTTTTCAGGCTCCGATTCTGGGTATGGATCTTCATCTAAGAGCTCTGTCTCAGCCTCGGTTGGTTCG TCATCAAAGGACGGATTACAGACACTAAATACTGTGGAAGGACATTCCAATGTTGACAAGGTTTCATCTGGGGAACATGTAATTGGTCTGAAGCTTGGTA GAAGGACATATTTTGGAGATGTATGCACAACCAAGTCTGTTGTAGCAGTTAAGAGACCTAGGAGCTCATGTCAAAGTGTGCAGTCTCCTTGCTGTCAAGT TGAAGGATGCAACCTTGACCTCAAGTCAGCTAAAGATTACCATCGGAGGCATAGAATCTGTGAAAGCCATTCAAAAAGTCCCAAAGTCGTTGTTTCTGGC TTGGAACGCCGGTTTTGCCAGCAGTGCAATAACAGGCGGCAGATGAATAGAGTAGCATTACGGGCTAAAAGCTTCACCTGGCCAAGCGGATGCAGCCTTG ATTCTTTACCTAAAATTATGAAATCAAAAGGCATGTCTAGGCAGATGAGCAATTTGTCTATTAATGATGTGCATGAAGAGATGATCTCAGACAAGGGCTT GTCTTTCAAAAGCAGTACATCTCAGATCTTTAGTGAAGGTTTAGAGTGCTCTTCTTCAACTTGTAACCTGGAGATGAACCCTAATTTTGGGGGTGCTCTC TCTCTTCTGTCAACCACTTCATCATGGGGTTTGAATGAGCCTACAGCTCTGGAGCAGATGACGCTAGTCAAGAACACAAGTATGGCCCATCAAACAATGA TTCATGCAGCAGAACCTCAAAGCTGGTCACTCTCGCCATCAGCAGCAAATGCATTTGATGGAAATATCACTACGCTCCAGCAGTTTCATCAATGTAAAAC GCCATATCAGCCTGGCTCCTTCTACTCCAATCCAACGGACTAA
AA sequence Show only first row Show all	>Lus10040595 pacid=23157647 polypeptide=Lus10040595 locus=Lus10040595.g ID=Lus10040595.BGIv1.0 annot-version=v1.0 MSHSGRAAIASPSLTSCVAMDWNLKSASEWDWDNLYGFSSRTCGTQKQQVKHLNPEAEGEGVGRIDSGLIYSHGCAGGFSGSDSGYGSSSKSSVSASVGS SSKDGLQTLNTVEGHSNVDKVSSGEHVIGLKLGRRTYFGDVCTTKSVVAVKRPRSSCQSVQSPCCQVEGCNLDLKSAKDYHRRHRICESHSKSPKVVVSG LERRFCQQCNNRRQMNRVALRAKSFTWPSGCSLDSLPKIMKSKGMSRQMSNLSINDVHEEMISDKGLSFKSSTSQIFSEGLECSSSTCNLEMNPNFGGAL SLLSTTSSWGLNEPTALEQMTLVKNTSMAHQTMIHAAEPQSWSLSPSAANAFDGNITTLQQFHQCKTPYQPGSFYSNPTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	0	1
AT3G56140			Protein of unknown function (D...		Lus10017422 [exp]	1.0	0.8663
AT5G02440			unknown protein		Lus10025345 [exp]	3.5	0.8506
AT1G18160			Protein kinase superfamily pro...		Lus10027247 [exp]	3.7	0.8615
AT4G33625			unknown protein		Lus10007070 [exp]	6.3	0.8361
AT5G58160			actin binding (.1)		Lus10007447 [exp]	9.2	0.8173
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	11.5	0.8088
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	11.7	0.8159
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10030315 [exp]	12.7	0.7553
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	14.5	0.8053
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10014891 [exp]	15.7	0.8066

Compare expression of checked genes

Lus10040595 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.