Plant FIBer expression Database

Lus10040598 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10310 337 / 5e-110 ATHKT1, HKT1 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030616
[exp]
417 / 1e-140 AT4G10310 399 / 4e-134 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10030872
[exp]
379 / 1e-125 AT4G10310 390 / 2e-130 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Lus10026948
[exp]
337 / 1e-110 AT4G10310 306 / 5e-99 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G132200
[exp]
342 / 1e-111 AT4G10310 413 / 9e-140 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
Potri.018G147501
[exp]
176 / 2e-52 AT4G10310 150 / 2e-43 high-affinity K+ transporter 1, high-affinity K+ transporter 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0030 Ion_channel PF02386 TrkH Cation transport protein
Representative CDS sequence
>Lus10040598 pacid=23157755 polypeptide=Lus10040598 locus=Lus10040598.g ID=Lus10040598.BGIv1.0 annot-version=v1.0
ATGTCCCTAAATGACCTCGTCGCTCCTCCAATGGAACGTTTCTACATAACTACGAGTACCACTCTAACTAAGGTCTCCTCTATCACCGGTGTATCTTCTG
CCAGAGGAACCATATATCACCCGGTAGCTACGTGGCTAAACAAGTTGGGTGGCTTCCGAGTTAACTCATTCTCAACTCACCTCACCTACTTTCTATCCCT
CTCCCTCTTAGGATACATCTTACTCAAGTCCTTCAACACCACCACCGCCGCCCGGAGCCTAGACTTGTTCTTCACGGCGGTATCCGCCGCCACCGAGTCC
AGCATGTCCGTCGTCGAAATGGAGGCCTTCTCCCTCCCTCAGCTCCTCGTCATCACCTTTCTCATGTTCGGCGGCGGCGACATGTTCCTCTCCTTACTTG
CTCTATTCCTAGAGTTTCGAAATTTACCGGGAGACGACCAGCTGCCGGTCCGTCATGATGATGAGCTAGCGGAGGAGATCAAATTCATAAAGAGAAAATC
AATCCGTTTCCTCTGCTTCATGCTGCTTACTTATCTAACAACAGTACATGTTGTAGGCATTCTCTCCCTCCTTTCCTACCTGGCGCTTCACAAGGGTGCC
GCCAACATTCTGAGCCAAAGAGGATTTGGAAGTTTCACGTTTTCTCTCTTCACCGTTGTTTCAACGTTCGCAAACTGCGGATTCATCCCAACCAACGAGA
ATATGATTCTTTTTGGGAAGAACTCTGGCTTACTACTCTTACTCATACCACTCATCCTCTTAGGGAATACTATGTTCCCACCTTGCCTACGGATATGCCT
CTGGCTGGCCGCCAAATTTTTCCCAAACGCAAACGGTAAGGAATATTCTAAATACCTACTGAGGAACACGGCGGCGGCCAAGGGTGTTCTGCTCCCGGGA
AAGCACTCTGCATATTTGGCGGCGACGGTTGCCGGGTTCGTTATGGTTCAGGTAATGATGTTCTGCGCTTTGAACTGGAATATGGAAGCTATGAGGGGAT
GGAGCTCATTTGAGAAGCTTGTCGGAGGGACTTTTATGGCCGTCAATTCCAGGCATTCTGGGGAGTCCGCCGTTGATTTGTCCTCTGTTTCCCCCGCGGT
TTTGGTGCTCTTCCTCCTCATGATGTATCTTCCTCCATACACGGTGTTCCTCCCCACAGACACAGAGGGAAAAGATAAAGTAGTGATGATGATAGACGAT
GAAGAAACCAATCTTCAACCTTTGCAAAGGAGAGGACAGACACCAATTCCTCATCCTAATAATAAAGAGATCATCAAAAGTAGAAATTTTATCGTCGACA
ATGTCTTTTTCTCACAACTCTGCTTTCTCCTCACCTTCGTTATTATGGTATGCATTACGGAGAGGGACAATTTGCAGACTGATCCCCTCAATTTCAATGT
TTTCAACATTGCCCTCGAAGTTGTCAGTGCATATGGGAATGTAGGGTTTTCAATGGGTTATAGTTGCAAAAAACAAATAAATCCCATTGGAAATTGCGAG
GAAAAATGTTATAGCTTGTGTGGAAGATGGAGTGATGAAGGTAAAATCATCCTAATTATCGTCATGCTTTTTGGAAAGCTCAAGAAATTCAACCTTCATG
GAGGCAAGGCTTGGAAACTCTCATAA
AA sequence
>Lus10040598 pacid=23157755 polypeptide=Lus10040598 locus=Lus10040598.g ID=Lus10040598.BGIv1.0 annot-version=v1.0
MSLNDLVAPPMERFYITTSTTLTKVSSITGVSSARGTIYHPVATWLNKLGGFRVNSFSTHLTYFLSLSLLGYILLKSFNTTTAARSLDLFFTAVSAATES
SMSVVEMEAFSLPQLLVITFLMFGGGDMFLSLLALFLEFRNLPGDDQLPVRHDDELAEEIKFIKRKSIRFLCFMLLTYLTTVHVVGILSLLSYLALHKGA
ANILSQRGFGSFTFSLFTVVSTFANCGFIPTNENMILFGKNSGLLLLLIPLILLGNTMFPPCLRICLWLAAKFFPNANGKEYSKYLLRNTAAAKGVLLPG
KHSAYLAATVAGFVMVQVMMFCALNWNMEAMRGWSSFEKLVGGTFMAVNSRHSGESAVDLSSVSPAVLVLFLLMMYLPPYTVFLPTDTEGKDKVVMMIDD
EETNLQPLQRRGQTPIPHPNNKEIIKSRNFIVDNVFFSQLCFLLTFVIMVCITERDNLQTDPLNFNVFNIALEVVSAYGNVGFSMGYSCKKQINPIGNCE
EKCYSLCGRWSDEGKIILIIVMLFGKLKKFNLHGGKAWKLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G10310 ATHKT1, HKT1 high-affinity K+ transporter 1... Lus10040598
[exp]
0 1
AT1G64390 ATGH9C2 glycosyl hydrolase 9C2 (.1) Lus10033957
[exp]
6.2 0.7679
AT5G13750 ZIFL1 zinc induced facilitator-like ... Lus10034794
[exp]
9.9 0.7325
AT3G12890 ASML2 activator of spomin::LUC2 (.1) Lus10031192
[exp]
13.4 0.7251
AT2G01420 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxi... Lus10020829
[exp]
15.1 0.7175
AT3G12890 ASML2 activator of spomin::LUC2 (.1) Lus10031770
[exp]
26.2 0.6825
Lus10022875
[exp]
36.7 0.6930
AT1G60060 Serine/threonine-protein kinas... Lus10012986
[exp]
41.2 0.6925
AT5G23720 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, ... Lus10043195
[exp]
43.4 0.6743
AT5G58160 actin binding (.1) Lus10024450
[exp]
45.0 0.6885
AT1G72880 Survival protein SurE-like pho... Lus10008390
[exp]
52.2 0.6741

Lus10040598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.