Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01660 180 / 3e-50 unknown protein AT4G19860 62 / 3e-10 alpha/beta-Hydrolases superfamily protein (.1) AT1G26930 46 / 3e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 46 / 4e-05 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G02990 45 / 7e-05 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G27420 44 / 0.0002 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G39580 43 / 0.0004 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G49000 42 / 0.0006 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018307 [exp] 561 / 0 AT5G01660 276 / 3e-82 unknown protein Lus10012220 [exp] 44 / 3e-08 AT5G01660 224 / 1e-66 unknown protein Lus10023608 [exp] 50 / 3e-06 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10020960 [exp] 46 / 4e-05 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017860 [exp] 45 / 9e-05 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10025357 [exp] 45 / 0.0001 AT1G22040 497 / 6e-174 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037196 [exp] 44 / 0.0002 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10042824 [exp] 42 / 0.0008 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018308 [exp] 0 / 1 AT1G69550 147 / 1e-35 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074200 [exp] 231 / 1e-68 AT5G01660 488 / 2e-164 unknown protein Potri.016G127600 [exp] 212 / 5e-62 AT5G01660 628 / 0.0 unknown protein Potri.015G121000 [exp] 77 / 4e-15 AT4G19860 781 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G121596 [exp] 70 / 1e-12 AT4G19860 756 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G170000 [exp] 51 / 1e-06 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G176000 [exp] 49 / 6e-06 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G059200 [exp] 47 / 1e-05 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G091900 [exp] 47 / 1e-05 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G077800 [exp] 47 / 2e-05 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.019G042100 [exp] 47 / 2e-05 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10040599 pacid=23157611 polypeptide=Lus10040599 locus=Lus10040599.g ID=Lus10040599.BGIv1.0 annot-version=v1.0 ATGTTATCCTTCCCACTGCATTCGAAATCGAAACCCACAAGGAGAAGGGTCACTTCTCTAAAGGAGGAATGGGAGATAGTCTCTGGAGATGAAGACGAAC TTGAAGGAGTGGACGGCTCGAAGCCTGTGGTGAGAACAATGACTGTTTCTCGCCCAGGCGACGACCATAACTCGGCAGCAGTAGCCTGTGCAACCCTGGT CCTTCATCCCCAGAGTGAGGGGAAGGAACATGTAGAGTTAAATAATGCATTAGAGCTTTCGTCAGTAGCCACGAGAGGAAAAAGTGATGGGTTGTGTAAA TACTGCGTCCCTGAACAAGAATGCGATGATACGAATGTGATTTCTTCAGCTTATCAAAGTGTGGATGGAGAGAGTTTCTCAGAAGTGGCTTCGGATACAA GAACTGTAAGATCAAAGGATAAGGACACAGGTTCTGCTGGGAGAATGATAGATTTGGAAATGCAATCTTCTGGTGCCTTTTCAATGTCTCAGGTGAGATC AAAACTACAGATACGGCAACTGAGCAAGGTGAGGGAATCTGCTGTATTCCCAGCTATCCATCTGACAGAAGAGTCAGATGATGAAGTTGATACGACGAGT TCAATATCTGACAAACGAGTATTAGTAGCAGGAGGGTTTAATGGTTCGTCCTGGCTGCCTGAGTTGGATTCATATTCTCTGTCCGAAGACACAATGAAAC AATTCAGTCCTATGCTGTCTACCCGTTCTTATGCTTCAGCAGCAAAGTTTAATGACGAACTCTACTTGATTGGTGGTTTACGCGGCGATGTGTTTTCTGA CCAAGGAGGAGGGAACGGAGCTGGATGCTCTGCGGAGGTTGAAATGTTTGATGCAGATGCTGGCAGGTGGATTCTTACTCAGTCCATGCTTCTTTCGATA AAAGGGTCAGTTGAAAGATTGGATCCCAGAGAACATTCCTGGACAAGACTACAAGACATGAACACAATCCGATCATGCCACTGCTTAGCTGTTCTTAATG AGAAACTATATGCATATGGAGGTTACGATGGAACTAGTACGGTTGCTAGCATGGAAGTTCTTGACCCTCGTACCGGATCATGGATTAACAAAGAATCCAT GAATACTGCTAGAAGCTACTTCGGCGCTTTTGTAATGGACGATATGATACATGTCCTCGGAGGCCTCCAGGATAAAGGGGAATTACCAGACACGGTGGAG CATTACAAGGAAGGACAAGGGTGGAAGGTGAGCAACCTGAAAGGCATTGGAAAGAGATGCTTCCTCTCTACTGCTGTCTTCTGA
AA sequence Show only first row Show all	>Lus10040599 pacid=23157611 polypeptide=Lus10040599 locus=Lus10040599.g ID=Lus10040599.BGIv1.0 annot-version=v1.0 MLSFPLHSKSKPTRRRVTSLKEEWEIVSGDEDELEGVDGSKPVVRTMTVSRPGDDHNSAAVACATLVLHPQSEGKEHVELNNALELSSVATRGKSDGLCK YCVPEQECDDTNVISSAYQSVDGESFSEVASDTRTVRSKDKDTGSAGRMIDLEMQSSGAFSMSQVRSKLQIRQLSKVRESAVFPAIHLTEESDDEVDTTS SISDKRVLVAGGFNGSSWLPELDSYSLSEDTMKQFSPMLSTRSYASAAKFNDELYLIGGLRGDVFSDQGGGNGAGCSAEVEMFDADAGRWILTQSMLLSI KGSVERLDPREHSWTRLQDMNTIRSCHCLAVLNEKLYAYGGYDGTSTVASMEVLDPRTGSWINKESMNTARSYFGAFVMDDMIHVLGGLQDKGELPDTVE HYKEGQGWKVSNLKGIGKRCFLSTAVF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01660			unknown protein		Lus10040599 [exp]	0	1
					Lus10003825 [exp]	2.0	1.0000
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	2.8	1.0000
AT5G56990			unknown protein		Lus10029528 [exp]	4.0	1.0000
					Lus10029261 [exp]	4.2	1.0000
					Lus10038051 [exp]	4.9	1.0000
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013367 [exp]	4.9	0.9945
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	5.0	1.0000
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	5.9	0.9980
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	6.9	0.9864
AT5G59190			subtilase family protein (.1)		Lus10040747 [exp]	7.1	0.9908

Compare expression of checked genes

Lus10040599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.