Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55180 629 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 612 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G05790 600 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G56590 361 / 3e-120 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 344 / 9e-114 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G24318 340 / 6e-113 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 341 / 1e-112 O-Glycosyl hydrolases family 17 protein (.1) AT3G07320 340 / 1e-112 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 336 / 2e-110 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 335 / 4e-110 O-Glycosyl hydrolases family 17 protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018306 [exp] 861 / 0 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 709 / 0 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 702 / 0 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 582 / 0 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040461 [exp] 357 / 5e-119 AT2G16230 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10023576 [exp] 350 / 2e-116 AT2G16230 644 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10038211 [exp] 340 / 2e-112 AT3G07320 614 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004962 [exp] 339 / 2e-112 AT5G24318 462 / 8e-161 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 335 / 8e-111 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G094400 [exp] 674 / 0 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G224600 [exp] 616 / 0 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.014G158400 [exp] 606 / 0 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.012G017800 [exp] 367 / 4e-123 AT5G24318 583 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G247900 [exp] 364 / 3e-122 AT3G07320 653 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.009G115400 [exp] 355 / 8e-119 AT4G34480 645 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G153800 [exp] 354 / 3e-118 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G068600 [exp] 352 / 9e-117 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G261800 [exp] 340 / 6e-113 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.001G240000 [exp] 341 / 1e-112 AT5G24318 508 / 2e-178 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10040600 pacid=23157867 polypeptide=Lus10040600 locus=Lus10040600.g ID=Lus10040600.BGIv1.0 annot-version=v1.0 ATGGCTACCTTTTCCATTCTACCTTTCATTCTAATTTCATCCCTTGCTCTCTTGTATCCTTCACCAGCAGATGCCGTCGGAGGATCCATCGGAGTCAACT ATGGCAGAATCGCCGATGACCTACCCACACCGGCAAAAGTAGTAGACCTCCTCAAATCCCAAGGAATTACCCGAGTCAAACTCTATGACACAAACTCCGA TGTCCTCATGGCCCTCGCCGGCTCCGGCATAGCCGTCACAGTGGCTCTCCCCAACGAGATGCTCTCCGACACGGCCGCCGACCAAACCTTTTCCGACAAC TGGGTCCATGCCAATATCTCCCAATTCTATCCTTCAACCCAATTCGAATCCATCGCCGTCGGTAACGAAGTCTTCGTCGACCCCAAAAACACCACCCCTT ATCTCGTACCGGCGATGAACAACATCTACAACTCGCTGGTGAAGTACAACCTCACCTCAATCAAGGTCTCGTCCCCGATCGCCCTCAGCGCGCTCCAGAA TTCGTACCCGGCTTCATCCGGGTCGTTTAAACCCGAATTGGTTGATTCCGTCATTAAGCCGATGTTGAGCTTTTTAAAGCAATCGGGATCTTATCTGATG GTCAATGCTTACCCGTTCTTCGCGTACACGGCTAACGCCGATCAGATCTCATTGGATTACGCTCTGTTTAAGCCCAATTCAGGGGTGGTGGACTCGGGTA ATGGACTCAAGTATTACAGCCTGCTGGAGGCCCAATTGGATGCCGTTAATGCCGCAATGGCGGCTGTACAATACGATGAAGTTAAGATGGTGGTGACGGA AACAGGGTGGCCGTCGAAGGGTGACGAAAACGAGGTCGGAGCGGGTAAGGAGAATGCACAGGCGTATAATGATAACTTGGTCAGCAGGGTTTTGACCGGG AACGGAACGCCGTTGAGGCCGCAGGAGCCGTTGAATGTTTTTCTGTTTGCGCTGTTTAATGAGAATCAAAAGCCGGGCCCCACATCAGAGAGGAATTACG GGATGTTCTATCCGGACGAGAAGAAGGTATACGACATAACGTTCTCGAGTACGACGGCGGCGGAGGGTAACGGAAGCAGCGGCGAAGGGGAGGGAGTTTC CAAGTCTTCGACGCCGGGGGGTCAAACGTGGTGTGTGGCGAACTCGAAAGTCGGGGAAAAGAAGCTGCAGGCGGGGATCGATTACGCTTGCGGGGAGGGG AAGGCTGACTGCCGTCCAATTCAGGAAGGGGCCACGTGTTACGATCCTAATACATTGGAGGCGCACGCCTCTTTTGCGTTCAATAGCTATTATCAGATGA AGCAGCGTGGCTCCGGCACCTGCGATTTCGGCGGCGCCGCTTATGTCGTCACCCAACCGCCCAGTTATGGAAAATGCGACTTTCCCACGGGATACTGA
AA sequence Show only first row Show all	>Lus10040600 pacid=23157867 polypeptide=Lus10040600 locus=Lus10040600.g ID=Lus10040600.BGIv1.0 annot-version=v1.0 MATFSILPFILISSLALLYPSPADAVGGSIGVNYGRIADDLPTPAKVVDLLKSQGITRVKLYDTNSDVLMALAGSGIAVTVALPNEMLSDTAADQTFSDN WVHANISQFYPSTQFESIAVGNEVFVDPKNTTPYLVPAMNNIYNSLVKYNLTSIKVSSPIALSALQNSYPASSGSFKPELVDSVIKPMLSFLKQSGSYLM VNAYPFFAYTANADQISLDYALFKPNSGVVDSGNGLKYYSLLEAQLDAVNAAMAAVQYDEVKMVVTETGWPSKGDENEVGAGKENAQAYNDNLVSRVLTG NGTPLRPQEPLNVFLFALFNENQKPGPTSERNYGMFYPDEKKVYDITFSSTTAAEGNGSSGEGEGVSKSSTPGGQTWCVANSKVGEKKLQAGIDYACGEG KADCRPIQEGATCYDPNTLEAHASFAFNSYYQMKQRGSGTCDFGGAAYVVTQPPSYGKCDFPTGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55180			O-Glycosyl hydrolases family 1...		Lus10040600 [exp]	0	1
AT5G07475			Cupredoxin superfamily protein...		Lus10012085 [exp]	4.0	0.9586
AT1G49960			Xanthine/uracil permease famil...		Lus10033773 [exp]	4.2	0.9562
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10028860 [exp]	5.3	0.9424
					Lus10034812 [exp]	6.2	0.9496
					Lus10003161 [exp]	6.3	0.9423
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10001293 [exp]	7.5	0.9057
					Lus10033897 [exp]	8.4	0.9384
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	10.0	0.9139
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016775 [exp]	11.0	0.9289
					Lus10018643 [exp]	11.5	0.9389

Compare expression of checked genes

Lus10040600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.