Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31190 445 / 2e-157 IMPL1 myo-inositol monophosphatase like 1 (.1) AT3G02870 84 / 1e-18 VTC4 Inositol monophosphatase family protein (.1.2.3) AT4G39120 62 / 2e-10 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018305 [exp] 608 / 0 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10027343 [exp] 87 / 3e-19 AT3G02870 419 / 5e-149 Inositol monophosphatase family protein (.1.2.3) Lus10039046 [exp] 74 / 1e-14 AT3G02870 323 / 1e-110 Inositol monophosphatase family protein (.1.2.3) Lus10041968 [exp] 59 / 1e-09 AT4G39120 447 / 6e-158 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10017976 [exp] 50 / 1e-06 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G120492 [exp] 489 / 9e-175 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.015G120400 [exp] 477 / 6e-170 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.010G156300 [exp] 89 / 2e-20 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3) Potri.016G011000 [exp] 88 / 6e-20 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3) Potri.006G014900 [exp] 87 / 2e-19 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3) Potri.010G156500 [exp] 81 / 2e-17 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.009G120600 [exp] 60 / 6e-10 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10040601 pacid=23157863 polypeptide=Lus10040601 locus=Lus10040601.g ID=Lus10040601.BGIv1.0 annot-version=v1.0 ATGGCTAGTTCTTCGCTCCTCTCCTCTGCAAACATCTCCCTTCAATTTTCTCAGGTGCCCAAATCCTGTTCGCCATTCAATCGCTCCTTCCAATGCCTTG TTCCCTTCTCGCTGAAGGAAAATTCCTACGATGGCTACCCCAGACTTCGATCCTTCCACACGAAACCAACGAGGAGCTTGTGCACAAAGGCTGTTCTATC GGAGCTTCCTTACCAGAGCCAGTACCCGAAAATGGGAGCTTCGTATGCAGGATCCATACCGCTTGACCAGCTCATTCAAGTCGTCGAGACTGCTGCCAAG ACTGGAGCTGAGGTGGTGATGGATGCAGTTAATAAGCCTCGGAACATCACTTACAAAGGACTTACTGACCTAGTCACCGACACAGACAAAATGAGTGAGG CTGCTATATTAGAAGTCGTTAACAAGAATTTTGGAGATCACCTTATTCTTGGGGAAGAAGGTGGAATCATTGGTGATAGCCTTTCGGATTACCTTTGGTG CATCGATCCTCTAGATGGAACAACAAATTTCGCACATGGTTATCCCAGCTTTGCAGTTTCTGTGGGAGTTCTGTTTCGAGGAAAGCCAGCTGCTGCCGCT GTGGTGGAATTTGTTGGAGGTCCTATGGCATGGAATACTCGTCTTTTCTCTGCAACTGCAGGCGGGGGAGCTTATTGTAATGGTCAAAGAATTCATGCCA GTCAAACTGATATGGTGGAGCGATCACTTCTAGTAACTGGGTTCGGATATGAACATGACGATGCATGGTCTACTAACATTGAGTTATTCAAGGAGTTCAC TGATGTCAGCAGGATGGTTGAAGAGGCTGGAGGAACAGTAACTTGCATGGATGGAGGGAAGTTCTGTGTCTTCGATAGATCAGTTTTGGTGTCTAACGGG GTCCTCCATTCAAAGCTTTTGGAGAGAATCGCTCCTCCAACTGAAGAACTCAAAAACAAAGGAATAGATTTCTCACTATGGTTCAAGCCGGAAAATTACC ACACAGATTTTTGA
AA sequence Show only first row Show all	>Lus10040601 pacid=23157863 polypeptide=Lus10040601 locus=Lus10040601.g ID=Lus10040601.BGIv1.0 annot-version=v1.0 MASSSLLSSANISLQFSQVPKSCSPFNRSFQCLVPFSLKENSYDGYPRLRSFHTKPTRSLCTKAVLSELPYQSQYPKMGASYAGSIPLDQLIQVVETAAK TGAEVVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVVNKNFGDHLILGEEGGIIGDSLSDYLWCIDPLDGTTNFAHGYPSFAVSVGVLFRGKPAAAA VVEFVGGPMAWNTRLFSATAGGGAYCNGQRIHASQTDMVERSLLVTGFGYEHDDAWSTNIELFKEFTDVSRMVEEAGGTVTCMDGGKFCVFDRSVLVSNG VLHSKLLERIAPPTEELKNKGIDFSLWFKPENYHTDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Lus10040601 [exp]	0	1
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Lus10023089 [exp]	1.0	0.9173
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Lus10015102 [exp]	11.8	0.9069
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039689 [exp]	12.8	0.9109
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10021023 [exp]	19.1	0.9074
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	20.1	0.9061
AT3G59630			diphthamide synthesis DPH2 fam...		Lus10020375 [exp]	29.9	0.8710
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10024246 [exp]	31.9	0.8998
AT2G30970		ASP1	aspartate aminotransferase 1 (...		Lus10020720 [exp]	35.4	0.8978
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	36.0	0.9009
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10031622 [exp]	39.2	0.8980

Compare expression of checked genes

Lus10040601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.