Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33920 82 / 1e-19 ATPP2-A4 phloem protein 2-A4 (.1) AT1G65390 82 / 3e-18 ATPP2-A5 phloem protein 2 A5 (.1.2) AT4G19840 66 / 4e-13 AtPP2A-1, ATPP2-A1 phloem protein 2-A1 (.1) AT4G19850 64 / 1e-12 PP2A2, ATPP2-A2 ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-A2, lectin-related (.1.2) AT5G24560 64 / 2e-12 ATPP2-B12 phloem protein 2-B12 (.1) AT5G45080 65 / 3e-12 ATPP2-A6 phloem protein 2-A6 (.1) AT2G26820 60 / 1e-10 ATPP2-A3 phloem protein 2-A3 (.1) AT5G45070 59 / 2e-10 ATPP2-A8 phloem protein 2-A8 (.1) AT1G09155 58 / 5e-10 ATPP2-B15 phloem protein 2-B15 (.1) AT1G80110 57 / 6e-10 ATPP2-B11 phloem protein 2-B11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018303 [exp] 355 / 1e-126 AT1G65390 84 / 3e-20 phloem protein 2 A5 (.1.2) Lus10018301 [exp] 326 / 4e-115 AT1G65390 87 / 4e-20 phloem protein 2 A5 (.1.2) Lus10040606 [exp] 321 / 4e-113 AT1G65390 87 / 1e-21 phloem protein 2 A5 (.1.2) Lus10018304 [exp] 83 / 1e-18 AT4G19840 197 / 3e-61 phloem protein 2-A1 (.1) Lus10040602 [exp] 78 / 6e-17 AT4G19840 191 / 8e-59 phloem protein 2-A1 (.1) Lus10029674 [exp] 64 / 4e-12 AT2G02230 237 / 2e-76 phloem protein 2-B1 (.1) Lus10042713 [exp] 61 / 4e-11 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10018171 [exp] 56 / 2e-09 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1) Lus10023207 [exp] 55 / 5e-09 AT2G02240 213 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G120300 [exp] 207 / 6e-68 AT5G24560 88 / 4e-21 phloem protein 2-B12 (.1) Potri.012G120400 [exp] 77 / 7e-17 AT4G19840 233 / 1e-76 phloem protein 2-A1 (.1) Potri.015G120200 [exp] 62 / 6e-12 AT1G10155 137 / 4e-41 phloem protein 2-A10 (.1) Potri.005G022000 [exp] 62 / 1e-11 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.012G120340 [exp] 59 / 9e-11 AT1G10155 133 / 1e-39 phloem protein 2-A10 (.1) Potri.006G267000 [exp] 59 / 3e-10 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.006G266900 [exp] 57 / 1e-09 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.001G050100 [exp] 56 / 2e-09 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.018G016000 [exp] 56 / 3e-09 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.018G015800 [exp] 53 / 3e-08 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040603 pacid=23157749 polypeptide=Lus10040603 locus=Lus10040603.g ID=Lus10040603.BGIv1.0 annot-version=v1.0 ATGAGTCTCATTCAACAACACAATTATCACAACAGCAACGACATTTCCAGCTCTTCTTCCCCTCACTGGAAGTCTACTGATGGAGGTTACTCCTTGATAT CCCATGACCCAAATCTTCACGGAGTGTACAGAATCCCCCCCAGAGCTCTCAACATAATCTGGGGGAACGACCCTCGCTACTGGCAATGGATCCAGCTCTC TGATCTCGATAAGAGTGCAAGTGGGTTCAAGGACATGGGAGCAATGTTGGCTCAGGTGAACTGGATTCAGGTGACCGGGAGGCTGCCGCTGAGTTGGTTG ATGGGAAGTCGAAAGTATGAGGTAGTATGGGTGGTGAAGTTCAGGGTGGATGCGTTCGGGTGGCATTCTGTTCCAATCAAGTTCAAGGTGAAGCAAGCGA ACAGAGAAGAGAAGGTGAGGAGTGTGGTTCTGGAGCCTTACAGGCAGAAGCACGGTGTCTGGCATGAGATCTCCGGTGGGGAGTTCACAGTGGTCGCTGG GAGAGGAGGAGGAATGGTGGAGTTTGGGATGTATGAAGTCGATAGCGAGTGGTGGAAAGGTAGCATGGTCATTGCAGGCGTCAAGATTATCCCCAAATCT TGA
AA sequence Show only first row Show all	>Lus10040603 pacid=23157749 polypeptide=Lus10040603 locus=Lus10040603.g ID=Lus10040603.BGIv1.0 annot-version=v1.0 MSLIQQHNYHNSNDISSSSSPHWKSTDGGYSLISHDPNLHGVYRIPPRALNIIWGNDPRYWQWIQLSDLDKSASGFKDMGAMLAQVNWIQVTGRLPLSWL MGSRKYEVVWVVKFRVDAFGWHSVPIKFKVKQANREEKVRSVVLEPYRQKHGVWHEISGGEFTVVAGRGGGMVEFGMYEVDSEWWKGSMVIAGVKIIPKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33920		ATPP2-A4	phloem protein 2-A4 (.1)		Lus10040603 [exp]	0	1
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10042452 [exp]	3.6	0.6993
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10008098 [exp]	9.9	0.6579
AT5G49210			unknown protein		Lus10036792 [exp]	18.2	0.6905
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10038807 [exp]	19.4	0.6538
AT3G23710		AtTic22-III	translocon at the inner envelo...		Lus10022378 [exp]	19.6	0.6749
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10028012 [exp]	36.9	0.5992
AT1G69210			Uncharacterised protein family...		Lus10026674 [exp]	37.1	0.6663
AT5G22650		ATHD2B, HDT2, H...	ARABIDOPSIS HISTONE DEACETYLAS...		Lus10020543 [exp]	42.0	0.6033
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10030226 [exp]	44.1	0.5921
					Lus10025864 [exp]	49.8	0.6030

Compare expression of checked genes

Lus10040603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.