Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17200 228 / 2e-71 Pectin lyase-like superfamily protein (.1) AT3G15720 221 / 3e-68 Pectin lyase-like superfamily protein (.1.2) AT4G35670 214 / 4e-66 Pectin lyase-like superfamily protein (.1) AT4G32380 210 / 3e-65 Pectin lyase-like superfamily protein (.1) AT5G27530 213 / 4e-65 Pectin lyase-like superfamily protein (.1) AT5G44830 196 / 5e-60 Pectin lyase-like superfamily protein (.1) AT4G32375 189 / 1e-55 Pectin lyase-like superfamily protein (.1) AT5G44840 186 / 2e-55 Pectin lyase-like superfamily protein (.1) AT1G80140 182 / 1e-54 Pectin lyase-like superfamily protein (.1) AT1G80170 180 / 9e-53 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018302 [exp] 453 / 4e-162 AT5G17200 242 / 3e-78 Pectin lyase-like superfamily protein (.1) Lus10040610 [exp] 345 / 1e-116 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1) Lus10002727 [exp] 296 / 1e-98 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10014826 [exp] 262 / 9e-84 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10016940 [exp] 256 / 9e-82 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 234 / 6e-74 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10036205 [exp] 201 / 4e-64 AT5G27530 178 / 3e-54 Pectin lyase-like superfamily protein (.1) Lus10036035 [exp] 199 / 4e-61 AT3G15720 339 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10029511 [exp] 197 / 6e-59 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119700 [exp] 261 / 2e-84 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.018G028700 [exp] 243 / 4e-77 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.006G252900 [exp] 201 / 3e-61 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.001G199300 [exp] 194 / 4e-60 AT1G80140 189 / 4e-58 Pectin lyase-like superfamily protein (.1) Potri.006G052700 [exp] 199 / 7e-60 AT3G07970 449 / 7e-156 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 185 / 9e-55 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 184 / 4e-54 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.008G211900 [exp] 179 / 2e-52 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 179 / 4e-52 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 176 / 6e-51 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10040604 pacid=23157849 polypeptide=Lus10040604 locus=Lus10040604.g ID=Lus10040604.BGIv1.0 annot-version=v1.0 ATGGAGATGGAAGAAATGAAGCAGGCAGGGCAGGTAGGCAGGCGCTTTTGTTCGGGTATCCGGGTCGGTTATGGGCCTCCCAAAACCCTGCCCGGCCCCG AGCCCAACGGGCACCGGGTCCACCCGAATCCGGTAGTCTATTCGGTCAATCAACAAATAACCGGTCAAACCGGGCCGGATCCGGGCGGGTACCCGGATTT TCGGTTTCAAATGCCAACCCTAATCGACGGCCAGGGTCAGATCTGGTGGGACCATTGCAAACGTAATCTTGACTGTGACCGGCCAACTGCTCTGAGCTTC CACAGCTGTAACAATCTAGTCCTAAACTCGTTACACCACGTCAACAGCCAGAGGAACCACATCGGCATATGCGGGTCCCATGGCGTTGACATGTCTCACC TCATGATTACCGCGCCCGAAAACAGCCCAAACACCGATGGAATCGACATCGCCACCTCCTCGAACCTCAACATCCATGACTCGTTCATCGGGACTGGGGA CGATTGCATCGCCATCAACGGTTTCACGTCGCATGTCAACATCTCTAGCGTCATGTGTGGTCCCGGTCACGGAATCAGCATCGGTAGCTTGGGGAAGAAC GGAATTTACGAGACTGTTGAAGATGTCCATGTCCGGGACTGCACTTTTAAGGGCACCACCAACGGTGCCAGAATCAAGACTTGGAAGGGAGGAAGGGGGT ACGTGAGGAAGGTGAGTTTCGACGACATAACGCTGGTGAATGCGGAGAATCCGGTCATAATAGACCAGGAGTATTTCAGCGAGAATGCTCCGCCGTCGAG GGATCACGTGGAGATCACCGACATTAGATTTAGCGGAGTGAGGGGGACGACTCCGAGTGAGAAGGCAGTGGATATCAACTGCGTGGGAGGGTCGGGATGC AAAGCCATAGTGGTGGAGGGTATGGACATCAAATCAGCGGTTCATGGGGAGCAATTGGTTGCGGTTTGTAACAATGTTCATGGGGTTTCCAGAGACAACA GCTCTCCCAAGGTGTCTTGCCTGCGCCCATGA
AA sequence Show only first row Show all	>Lus10040604 pacid=23157849 polypeptide=Lus10040604 locus=Lus10040604.g ID=Lus10040604.BGIv1.0 annot-version=v1.0 MEMEEMKQAGQVGRRFCSGIRVGYGPPKTLPGPEPNGHRVHPNPVVYSVNQQITGQTGPDPGGYPDFRFQMPTLIDGQGQIWWDHCKRNLDCDRPTALSF HSCNNLVLNSLHHVNSQRNHIGICGSHGVDMSHLMITAPENSPNTDGIDIATSSNLNIHDSFIGTGDDCIAINGFTSHVNISSVMCGPGHGISIGSLGKN GIYETVEDVHVRDCTFKGTTNGARIKTWKGGRGYVRKVSFDDITLVNAENPVIIDQEYFSENAPPSRDHVEITDIRFSGVRGTTPSEKAVDINCVGGSGC KAIVVEGMDIKSAVHGEQLVAVCNNVHGVSRDNSSPKVSCLRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15720			Pectin lyase-like superfamily ...		Lus10040604 [exp]	0	1
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10038876 [exp]	7.4	0.7543
					Lus10039990 [exp]	10.5	0.7543
AT1G43780		SCPL44	serine carboxypeptidase-like 4...		Lus10040330 [exp]	12.8	0.7543
					Lus10011962 [exp]	14.8	0.7543
					Lus10024863 [exp]	15.9	0.7120
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	16.6	0.7543
					Lus10022805 [exp]	18.2	0.7543
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	19.6	0.7543
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	21.0	0.7543
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	22.2	0.7543

Compare expression of checked genes

Lus10040604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.